View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1677_high_10 (Length: 260)

Name: NF1677_high_10
Description: NF1677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1677_high_10
NF1677_high_10
[»] chr1 (9 HSPs)
chr1 (35-230)||(52513916-52514110)
chr1 (3-35)||(22149722-22149754)
chr1 (1-36)||(8108719-8108754)
chr1 (1-43)||(31848213-31848255)
chr1 (3-31)||(8109016-8109044)
chr1 (9-45)||(19008779-19008815)
chr1 (9-41)||(28634186-28634218)
chr1 (3-31)||(47955309-47955337)
chr1 (4-36)||(47955632-47955664)
[»] chr7 (7 HSPs)
chr7 (186-230)||(49162397-49162441)
chr7 (3-36)||(15567294-15567327)
chr7 (3-38)||(9412348-9412383)
chr7 (9-44)||(20418878-20418913)
chr7 (9-42)||(9034859-9034892)
chr7 (3-31)||(3687679-3687707)
chr7 (3-39)||(23686740-23686776)
[»] chr4 (7 HSPs)
chr4 (186-230)||(48794635-48794679)
chr4 (2-46)||(45830218-45830262)
chr4 (1-31)||(13198927-13198957)
chr4 (1-38)||(5205984-5206021)
chr4 (3-44)||(36096498-36096539)
chr4 (3-36)||(56505691-56505724)
chr4 (1-37)||(16555512-16555548)
[»] chr5 (8 HSPs)
chr5 (1-40)||(25116082-25116121)
chr5 (1-40)||(25175172-25175211)
chr5 (1-47)||(41382880-41382925)
chr5 (1-31)||(18433337-18433367)
chr5 (3-36)||(25115755-25115788)
chr5 (3-36)||(25174847-25174880)
chr5 (3-39)||(16466765-16466801)
chr5 (3-31)||(18433018-18433046)
[»] chr8 (11 HSPs)
chr8 (1-37)||(15155880-15155916)
chr8 (1-31)||(37752437-37752467)
chr8 (3-40)||(13027304-13027341)
chr8 (2-31)||(15156207-15156236)
chr8 (4-37)||(22786837-22786870)
chr8 (3-31)||(765737-765765)
chr8 (3-31)||(12281127-12281155)
chr8 (1-45)||(12281447-12281491)
chr8 (3-39)||(15042140-15042176)
chr8 (3-31)||(41662426-41662454)
chr8 (3-31)||(43246199-43246227)
[»] chr3 (4 HSPs)
chr3 (9-45)||(26007648-26007684)
chr3 (1-31)||(10293930-10293960)
chr3 (3-31)||(20969042-20969070)
chr3 (4-40)||(31577414-31577450)
[»] chr6 (4 HSPs)
chr6 (1-36)||(21032301-21032336)
chr6 (1-31)||(18241857-18241887)
chr6 (3-36)||(3404012-3404045)
chr6 (3-31)||(3403720-3403748)
[»] chr2 (9 HSPs)
chr2 (3-44)||(11883949-11883989)
chr2 (3-43)||(24832321-24832362)
chr2 (3-36)||(30190921-30190954)
chr2 (3-40)||(41790935-41790972)
chr2 (3-31)||(6171479-6171507)
chr2 (3-31)||(11883626-11883654)
chr2 (1-45)||(20347152-20347196)
chr2 (3-31)||(20347487-20347515)
chr2 (3-35)||(40469752-40469784)
[»] scaffold0319 (1 HSPs)
scaffold0319 (3-31)||(6397-6425)
[»] scaffold0192 (1 HSPs)
scaffold0192 (3-31)||(25392-25420)
[»] scaffold0001 (1 HSPs)
scaffold0001 (3-31)||(438933-438961)


Alignment Details
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 35 - 230
Target Start/End: Complemental strand, 52514110 - 52513916
Alignment:
Q  35 taaaataaaatgcatttagaaaaatatccacaaccactttgcgtggtaaaagctacatacacgctttgaatatcagaaagtactacta-nnnnnnnagat 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||        ||||    
T  52514110 taaaataaaatgcatttagaaaaatatccacaaccactttgcgtggtaaaagttacatacacgctttgaatatcagaaggtactactattttttttagat 52514011  T
Q  134 agataaaatgataaagctgaagactcatatacgcagatggtgtagtcaaattcaggggcggagctacatgccttttaggggatgcaagtgaaccccc 230  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||    
T  52514010 agataaaatgataaagctgaagactcatatatgtagatggtgtagtcaa--tcagggacggagctacatgccttttaggggatgcaagtgaaccccc 52513916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 22149722 - 22149754
Alignment:
Q  3 caaaagataggggggaaaagtgcaattaaacct 35  Q
    |||||||||||||||||||||||||||||||||    
T  22149722 caaaagataggggggaaaagtgcaattaaacct 22149754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 8108754 - 8108719
Alignment:
Q  1 aacaaaagataggggggaaaagtgcaattaaaccta 36  Q
    |||||||||||||| |||||||||||||||||||||    
T  8108754 aacaaaagatagggaggaaaagtgcaattaaaccta 8108719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 31848213 - 31848255
Alignment:
Q  1 aacaaaagataggggggaaaagtgcaattaaacctaaaataaa 43  Q
    ||||||||||||||| ||||||||||||||| |||| ||||||    
T  31848213 aacaaaagataggggagaaaagtgcaattaagcctataataaa 31848255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 31
Target Start/End: Original strand, 8109016 - 8109044
Alignment:
Q  3 caaaagataggggggaaaagtgcaattaa 31  Q
    |||||||||||||||||||||||||||||    
T  8109016 caaaagataggggggaaaagtgcaattaa 8109044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 19008779 - 19008815
Alignment:
Q  9 ataggggggaaaagtgcaattaaacctaaaataaaat 45  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  19008779 ataggggggaaaagtgcaattaagcctaaaaaaaaat 19008815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 28634186 - 28634218
Alignment:
Q  9 ataggggggaaaagtgcaattaaacctaaaata 41  Q
    |||||||||||||||||||||||||||| ||||    
T  28634186 ataggggggaaaagtgcaattaaacctataata 28634218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 47955337 - 47955309
Alignment:
Q  3 caaaagataggggggaaaagtgcaattaa 31  Q
    |||||||||||||||||||||||||||||    
T  47955337 caaaagataggggggaaaagtgcaattaa 47955309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 47955632 - 47955664
Alignment:
Q  4 aaaagataggggggaaaagtgcaattaaaccta 36  Q
    |||||||||||||||||||||||||||| ||||    
T  47955632 aaaagataggggggaaaagtgcaattaagccta 47955664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 49162397 - 49162441
Alignment:
Q  186 caggggcggagctacatgccttttaggggatgcaagtgaaccccc 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  49162397 caggggcggagctacatgccttttaggggatgcaagtgaaccccc 49162441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 15567294 - 15567327
Alignment:
Q  3 caaaagataggggggaaaagtgcaattaaaccta 36  Q
    ||||||||||||||||||||||||||||||||||    
T  15567294 caaaagataggggggaaaagtgcaattaaaccta 15567327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 38
Target Start/End: Original strand, 9412348 - 9412383
Alignment:
Q  3 caaaagataggggggaaaagtgcaattaaacctaaa 38  Q
    ||||||||||||||||||||||||||||| ||||||    
T  9412348 caaaagataggggggaaaagtgcaattaagcctaaa 9412383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 44
Target Start/End: Complemental strand, 20418913 - 20418878
Alignment:
Q  9 ataggggggaaaagtgcaattaaacctaaaataaaa 44  Q
    ||||||||||||||||||||||||||||||| ||||    
T  20418913 ataggggggaaaagtgcaattaaacctaaaaaaaaa 20418878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 9034892 - 9034859
Alignment:
Q  9 ataggggggaaaagtgcaattaaacctaaaataa 42  Q
    ||||||||||||||||||||||| ||||||||||    
T  9034892 ataggggggaaaagtgcaattaagcctaaaataa 9034859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 31
Target Start/End: Original strand, 3687679 - 3687707
Alignment:
Q  3 caaaagataggggggaaaagtgcaattaa 31  Q
    |||||||||||||||||||||||||||||    
T  3687679 caaaagataggggggaaaagtgcaattaa 3687707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 23686740 - 23686776
Alignment:
Q  3 caaaagataggggggaaaagtgcaattaaacctaaaa 39  Q
    |||||||||||||| |||||||||||||| |||||||    
T  23686740 caaaagatagggggaaaaagtgcaattaagcctaaaa 23686776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 48794635 - 48794679
Alignment:
Q  186 caggggcggagctacatgccttttaggggatgcaagtgaaccccc 230  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||    
T  48794635 caggggcggagctatatgtcttttaggggatgcaagtgaaccccc 48794679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 45830218 - 45830262
Alignment:
Q  2 acaaaagataggggggaaaagtgcaattaaacctaaaataaaatg 46  Q
    |||||||||||||| ||||||||| ||||| ||||||||||||||    
T  45830218 acaaaagataggggtgaaaagtgcgattaagcctaaaataaaatg 45830262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 13198927 - 13198957
Alignment:
Q  1 aacaaaagataggggggaaaagtgcaattaa 31  Q
    |||||||||||||||||||||||||||||||    
T  13198927 aacaaaagataggggggaaaagtgcaattaa 13198957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 5206021 - 5205984
Alignment:
Q  1 aacaaaagataggggggaaaagtgcaattaaacctaaa 38  Q
    |||||||||||||| |||||||||||||||| ||||||    
T  5206021 aacaaaagatagggaggaaaagtgcaattaagcctaaa 5205984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 36096498 - 36096539
Alignment:
Q  3 caaaagataggggggaaaagtgcaattaaacctaaaataaaa 44  Q
    ||||||||||||| |||||||||||||||||| |||| ||||    
T  36096498 caaaagataggggtgaaaagtgcaattaaaccaaaaaaaaaa 36096539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 56505724 - 56505691
Alignment:
Q  3 caaaagataggggggaaaagtgcaattaaaccta 36  Q
    ||||||||||||||||||||||||||||| ||||    
T  56505724 caaaagataggggggaaaagtgcaattaagccta 56505691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 16555548 - 16555512
Alignment:
Q  1 aacaaaagataggggggaaaagtgcaattaaacctaa 37  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  16555548 aacaaaagataagggggaaaagtgcaattaagcctaa 16555512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 25116082 - 25116121
Alignment:
Q  1 aacaaaagataggggggaaaagtgcaattaaacctaaaat 40  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  25116082 aacaaaagataggggggaaaagtgcaattaagcctaaaat 25116121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 25175172 - 25175211
Alignment:
Q  1 aacaaaagataggggggaaaagtgcaattaaacctaaaat 40  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  25175172 aacaaaagataggggggaaaagtgcaattaagcctaaaat 25175211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 41382925 - 41382880
Alignment:
Q  1 aacaaaagataggggggaaaagtgcaattaaacctaaaataaaatgc 47  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||    
T  41382925 aacaaaagataggggggaaaa-tgcaattaaacctaatataaaatgc 41382880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 18433337 - 18433367
Alignment:
Q  1 aacaaaagataggggggaaaagtgcaattaa 31  Q
    |||||||||||||||||||||||||||||||    
T  18433337 aacaaaagataggggggaaaagtgcaattaa 18433367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 25115788 - 25115755
Alignment:
Q  3 caaaagataggggggaaaagtgcaattaaaccta 36  Q
    ||||||||||||||||||||||||||||| ||||    
T  25115788 caaaagataggggggaaaagtgcaattaagccta 25115755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 25174880 - 25174847
Alignment:
Q  3 caaaagataggggggaaaagtgcaattaaaccta 36  Q
    ||||||||||||||||||||||||||||| ||||    
T  25174880 caaaagataggggggaaaagtgcaattaagccta 25174847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 16466765 - 16466801
Alignment:
Q  3 caaaagataggggggaaaagtgcaattaaacctaaaa 39  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  16466765 caaaatataggggggaaaagtgcaattaagcctaaaa 16466801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 18433046 - 18433018
Alignment:
Q  3 caaaagataggggggaaaagtgcaattaa 31  Q
    |||||||||||||||||||||||||||||    
T  18433046 caaaagataggggggaaaagtgcaattaa 18433018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 15155916 - 15155880
Alignment:
Q  1 aacaaaagataggggggaaaagtgcaattaaacctaa 37  Q
    ||||||||||||||||||||||||||||||| |||||    
T  15155916 aacaaaagataggggggaaaagtgcaattaagcctaa 15155880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 37752437 - 37752467
Alignment:
Q  1 aacaaaagataggggggaaaagtgcaattaa 31  Q
    |||||||||||||||||||||||||||||||    
T  37752437 aacaaaagataggggggaaaagtgcaattaa 37752467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 13027304 - 13027341
Alignment:
Q  3 caaaagataggggggaaaagtgcaattaaacctaaaat 40  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  13027304 caaaagataggggtgaaaagtgcaattaaaccaaaaat 13027341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 31
Target Start/End: Original strand, 15156207 - 15156236
Alignment:
Q  2 acaaaagataggggggaaaagtgcaattaa 31  Q
    ||||||||||||||||||||||||||||||    
T  15156207 acaaaagataggggggaaaagtgcaattaa 15156236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 22786870 - 22786837
Alignment:
Q  4 aaaagataggggggaaaagtgcaattaaacctaa 37  Q
    ||||||||||||| ||||||||||||||||||||    
T  22786870 aaaagatagggggaaaaagtgcaattaaacctaa 22786837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 765765 - 765737
Alignment:
Q  3 caaaagataggggggaaaagtgcaattaa 31  Q
    |||||||||||||||||||||||||||||    
T  765765 caaaagataggggggaaaagtgcaattaa 765737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 12281155 - 12281127
Alignment:
Q  3 caaaagataggggggaaaagtgcaattaa 31  Q
    |||||||||||||||||||||||||||||    
T  12281155 caaaagataggggggaaaagtgcaattaa 12281127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 12281447 - 12281491
Alignment:
Q  1 aacaaaagataggggggaaaagtgcaattaaacctaaaataaaat 45  Q
    ||||||||||| ||||||||||||||||||| || |||| |||||    
T  12281447 aacaaaagataagggggaaaagtgcaattaagccaaaaaaaaaat 12281491  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 15042176 - 15042140
Alignment:
Q  3 caaaagataggggggaaaagtgcaattaaacctaaaa 39  Q
    ||||||||| ||||| |||||||||||||||||||||    
T  15042176 caaaagataaggggggaaagtgcaattaaacctaaaa 15042140  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 31
Target Start/End: Original strand, 41662426 - 41662454
Alignment:
Q  3 caaaagataggggggaaaagtgcaattaa 31  Q
    |||||||||||||||||||||||||||||    
T  41662426 caaaagataggggggaaaagtgcaattaa 41662454  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 31
Target Start/End: Original strand, 43246199 - 43246227
Alignment:
Q  3 caaaagataggggggaaaagtgcaattaa 31  Q
    |||||||||||||||||||||||||||||    
T  43246199 caaaagataggggggaaaagtgcaattaa 43246227  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 26007648 - 26007684
Alignment:
Q  9 ataggggggaaaagtgcaattaaacctaaaataaaat 45  Q
    |||||||| ||||||||||||||||||||||||||||    
T  26007648 atagggggaaaaagtgcaattaaacctaaaataaaat 26007684  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 10293930 - 10293960
Alignment:
Q  1 aacaaaagataggggggaaaagtgcaattaa 31  Q
    |||||||||||||||||||||||||||||||    
T  10293930 aacaaaagataggggggaaaagtgcaattaa 10293960  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 31
Target Start/End: Original strand, 20969042 - 20969070
Alignment:
Q  3 caaaagataggggggaaaagtgcaattaa 31  Q
    |||||||||||||||||||||||||||||    
T  20969042 caaaagataggggggaaaagtgcaattaa 20969070  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 31577450 - 31577414
Alignment:
Q  4 aaaagataggggggaaaagtgcaattaaacctaaaat 40  Q
    ||||||||||||  |||||||||||||||||||||||    
T  31577450 aaaagataggggtcaaaagtgcaattaaacctaaaat 31577414  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 21032301 - 21032336
Alignment:
Q  1 aacaaaagataggggggaaaagtgcaattaaaccta 36  Q
    ||||||||||||||||||||||||||||||| ||||    
T  21032301 aacaaaagataggggggaaaagtgcaattaagccta 21032336  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 18241887 - 18241857
Alignment:
Q  1 aacaaaagataggggggaaaagtgcaattaa 31  Q
    |||||||||||||||||||||||||||||||    
T  18241887 aacaaaagataggggggaaaagtgcaattaa 18241857  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 3404012 - 3404045
Alignment:
Q  3 caaaagataggggggaaaagtgcaattaaaccta 36  Q
    ||||||||||||||||||||||||||||| ||||    
T  3404012 caaaagataggggggaaaagtgcaattaagccta 3404045  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 3403748 - 3403720
Alignment:
Q  3 caaaagataggggggaaaagtgcaattaa 31  Q
    |||||||||||||||||||||||||||||    
T  3403748 caaaagataggggggaaaagtgcaattaa 3403720  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 11883949 - 11883989
Alignment:
Q  3 caaaagataggggggaaaagtgcaattaaacctaaaataaaa 44  Q
    ||||||||||||||||||||||||||||| || |||||||||    
T  11883949 caaaagataggggggaaaagtgcaattaagcc-aaaataaaa 11883989  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 24832362 - 24832321
Alignment:
Q  3 caaaagataggggggaaaagtgcaattaaacc-taaaataaa 43  Q
    ||||||||||||||||||||||||||||| || |||||||||    
T  24832362 caaaagataggggggaaaagtgcaattaagccttaaaataaa 24832321  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 30190954 - 30190921
Alignment:
Q  3 caaaagataggggggaaaagtgcaattaaaccta 36  Q
    ||||||||||||||||||||||||||||| ||||    
T  30190954 caaaagataggggggaaaagtgcaattaagccta 30190921  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 41790935 - 41790972
Alignment:
Q  3 caaaagataggggggaaaagtgcaattaaacctaaaat 40  Q
    ||||| ||||||||||||||||||||||| ||||||||    
T  41790935 caaaatataggggggaaaagtgcaattaagcctaaaat 41790972  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 31
Target Start/End: Original strand, 6171479 - 6171507
Alignment:
Q  3 caaaagataggggggaaaagtgcaattaa 31  Q
    |||||||||||||||||||||||||||||    
T  6171479 caaaagataggggggaaaagtgcaattaa 6171507  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 11883654 - 11883626
Alignment:
Q  3 caaaagataggggggaaaagtgcaattaa 31  Q
    |||||||||||||||||||||||||||||    
T  11883654 caaaagataggggggaaaagtgcaattaa 11883626  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 20347196 - 20347152
Alignment:
Q  1 aacaaaagataggggggaaaagtgcaattaaacctaaaataaaat 45  Q
    |||||||||||| ||||||||||| |||||| |||| ||||||||    
T  20347196 aacaaaagatagaggggaaaagtgtaattaagcctataataaaat 20347152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 31
Target Start/End: Original strand, 20347487 - 20347515
Alignment:
Q  3 caaaagataggggggaaaagtgcaattaa 31  Q
    |||||||||||||||||||||||||||||    
T  20347487 caaaagataggggggaaaagtgcaattaa 20347515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 40469752 - 40469784
Alignment:
Q  3 caaaagataggggggaaaagtgcaattaaacct 35  Q
    |||||||||||||| ||||||||||||||||||    
T  40469752 caaaagatagggggaaaaagtgcaattaaacct 40469784  T

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Target: scaffold0319 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 6425 - 6397
Alignment:
Q  3 caaaagataggggggaaaagtgcaattaa 31  Q
    |||||||||||||||||||||||||||||    
T  6425 caaaagataggggggaaaagtgcaattaa 6397  T

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Target: scaffold0192 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 31
Target Start/End: Original strand, 25392 - 25420
Alignment:
Q  3 caaaagataggggggaaaagtgcaattaa 31  Q
    |||||||||||||||||||||||||||||    
T  25392 caaaagataggggggaaaagtgcaattaa 25420  T

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Target: scaffold0001 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 438961 - 438933
Alignment:
Q  3 caaaagataggggggaaaagtgcaattaa 31  Q
    |||||||||||||||||||||||||||||    
T  438961 caaaagataggggggaaaagtgcaattaa 438933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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