View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1677_high_12 (Length: 246)
Name: NF1677_high_12
Description: NF1677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1677_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 9649640 - 9649879
Alignment:
| Q |
1 |
catttagaatcattgattctaagtttgttttggggaaggtagtttgctgttgctgttaggcactacctgtgatgtgatgcttaggaattggcagcgatgc |
100 |
Q |
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| T |
9649640 |
catttagaatcattgattctaagtttgttttggggaaggtagtttgctgttgctgttaggcactacctatgatgtgatgcttaggaattggcagcggtgc |
9649739 |
T |
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| Q |
101 |
tgtgttgtttttgggttccttgtccgtatgtatactccggcctcattatttaggaagtattgaatgtctggtttggaggtgttccgtatacatgtagtgc |
200 |
Q |
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| T |
9649740 |
tgtgttgtttttgggttccttgtccgtatgtatactccggcctcattatttaggaagtattgaatgtctggtttggaggtgttccgtatacatgtagtgc |
9649839 |
T |
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| Q |
201 |
cggttgaatttgcttttgctttttccacgagtgcctatgc |
240 |
Q |
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| T |
9649840 |
cggttgaatttgcttttgctttttccacgagtgcctatgc |
9649879 |
T |
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Back To:
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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 195
Target Start/End: Complemental strand, 31034476 - 31034401
Alignment:
| Q |
120 |
ttgtccgtatgtatactccggcctcattatttaggaagtattgaatgtctggtttggaggtgttccgtatacatgt |
195 |
Q |
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| T |
31034476 |
ttgtccgtatgcatactccggcctcattattttggaagtttagggtgtttgttttagaggtgttctgtatatatgt |
31034401 |
T |
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