View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1677_high_14 (Length: 241)
Name: NF1677_high_14
Description: NF1677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1677_high_14 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 129 - 241
Target Start/End: Original strand, 17053516 - 17053628
Alignment:
| Q |
129 |
ttaacgatgtaaagtaagttgttcacttgaaagaaatttcctcttgttgaatgtgtgccttttgtggcaagacatcataaaccatttgcacaataatatt |
228 |
Q |
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| T |
17053516 |
ttaacgatgtaaaggaagttgttcacttgaaagaaatttcctcttgttgaatgtgtgccttttgtggcaagacatcataaaccatttgcacaataatatt |
17053615 |
T |
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| Q |
229 |
actagttcatttc |
241 |
Q |
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| T |
17053616 |
actagttcatttc |
17053628 |
T |
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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 17053388 - 17053433
Alignment:
| Q |
1 |
aaggtctcaactattgagattttgattctttaaagtaatcaaagtg |
46 |
Q |
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| T |
17053388 |
aaggtctcaactattgagatttggattctttaaagtaatcaaagtg |
17053433 |
T |
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