View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1677_high_5 (Length: 376)
Name: NF1677_high_5
Description: NF1677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1677_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 361
Target Start/End: Original strand, 35977976 - 35978320
Alignment:
| Q |
18 |
atttttcagtcaaatttataacttaaaacctacacacaacatttgtgctagcttttggaaccaaacaaacaaggaattagcagaatgcacggaaggtacg |
117 |
Q |
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| T |
35977976 |
atttttcagtcaaatttataacttaaaacctacacacaacatttttgctagcttttggaaccaaacaaacaaggaattagcagaatgcacggaaggtacg |
35978075 |
T |
|
| Q |
118 |
ttgatcatcatgtagctagggcggagaagagaagtttggattccacttctgctgaagatggtcagcctgatcggaaacgacctgctttggctaggttaat |
217 |
Q |
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| T |
35978076 |
ttgatcatcatgtagctagggcggagaagagaagtttggattccacttctgctgaagatggtcagcctgatcggaaacgacctgctttggctaggttaat |
35978175 |
T |
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| Q |
218 |
acctattaacttttggttaattaataatgttaagcattttgtttgtcttaaacttgtttaatgaatgc-nnnnnnnnnnnnnnnnnnnnngcagtgtgat |
316 |
Q |
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| T |
35978176 |
acctattaacttttggttaattaataatgttaagcattttgtttgtcttaaacttgtttattgaatgcttttatttttatatatttttttgcagtgtgat |
35978275 |
T |
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| Q |
317 |
tgttgaagccttgaaggtggatagtatgcagaaactgtgttcatc |
361 |
Q |
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| T |
35978276 |
tgttgaagccttgaaggtggatagtatgcagaaactgtgttcatc |
35978320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 361
Target Start/End: Complemental strand, 2964216 - 2964163
Alignment:
| Q |
308 |
cagtgtgattgttgaagccttgaaggtggatagtatgcagaaactgtgttcatc |
361 |
Q |
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| T |
2964216 |
cagtgtaattgttgaagcgttgaaggtggacagtctgcagaaactttgctcatc |
2964163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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