View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1677_high_6 (Length: 364)
Name: NF1677_high_6
Description: NF1677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1677_high_6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 6 - 364
Target Start/End: Original strand, 30977607 - 30977965
Alignment:
| Q |
6 |
gtccaagaatattgagtttaattataaaatcagtcaaatcacacaaattcaatatttacatcagtcagactaaacaagaatcattgaaatttgactgtaa |
105 |
Q |
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| T |
30977607 |
gtccaagaa-attgagtttaattataaaatcagtcaaatcacacaaattcaatatttacatcagtcagactaaacaagaatcattgaaatttgactgtaa |
30977705 |
T |
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| Q |
106 |
gacttttaaggtgagaagaacaaagaccaaaatcaaaatatgattgctaattgataagacatatatataacattatgaaaaagaaatgatgcatatcttt |
205 |
Q |
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| T |
30977706 |
gacttttaaggtgagaagaacaaagaccaaaatcaaaatatgattgctaattgataagacatatatataacattatgaaaaagaaataatgcatatcttt |
30977805 |
T |
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| Q |
206 |
gaagatttcatcacttacaatattttctgaattatggtttgaaaaatttctaaatcacttgatcattacaagatatatatttagaattcatccaac-nnn |
304 |
Q |
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| T |
30977806 |
gaagatttcatcacttacaatattttctgaatcatggtttgaaaaatttctaaatcacttgatcattacaagatatatatttagaattcatccaactttt |
30977905 |
T |
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| Q |
305 |
nnnnnnngacaaaagaactcatccaacttaaacaacaaattacaaaagaaatactaaaca |
364 |
Q |
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| T |
30977906 |
tttttttgacaaaagaactcatccaacttaaacaacaaattacaaaagaaatactaaaca |
30977965 |
T |
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