View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1677_high_7 (Length: 340)
Name: NF1677_high_7
Description: NF1677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1677_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 138; Significance: 4e-72; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 6 - 186
Target Start/End: Complemental strand, 15076415 - 15076234
Alignment:
| Q |
6 |
agagatatgaagaataatgagatgttaaagata-tcataa-ccaaagnnnnnnncatacaaaatatttaagtgcgatttttcataatattaaggatcaca |
103 |
Q |
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| T |
15076415 |
agagatatgaagaataatgagatgttaaagataatcataatccaaagaaaaaaacatacaaaatatttaagtgcgatttttcataatattaaggatcaca |
15076316 |
T |
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| Q |
104 |
atgtagctcaacacaacatttgactaagatttttcatcaaatcaaggtaactgaccacaatattcaggaagaaaacttgcaag |
186 |
Q |
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| T |
15076315 |
atgtagctcaacacaa-atttgactaagatttttcatcaaatcaaggtaactgaccacaatattcaggaagaaaacttgcaag |
15076234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 259 - 325
Target Start/End: Complemental strand, 15071016 - 15070950
Alignment:
| Q |
259 |
ggttacaaaatgacaagacacatattaagttgagagattctagcttaatttgtccatgcatgcataa |
325 |
Q |
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| T |
15071016 |
ggttacaaaatgacaagacacatattaagttgagagattctagcttaatttgtccatgcatgcataa |
15070950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 86 - 186
Target Start/End: Complemental strand, 15064508 - 15064408
Alignment:
| Q |
86 |
ataatattaaggatcacaatgtagctcaacacaacatttgactaagatttttcatcaaatcaaggtaactgaccacaatattcaggaagaaaacttgcaa |
185 |
Q |
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| T |
15064508 |
ataatatcaaggatcacaatgttggtgaacacaacatttgaccaagatattttatcaaatcaaggtaactgaacagaatattcatgagtaaaactagcaa |
15064409 |
T |
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| Q |
186 |
g |
186 |
Q |
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| T |
15064408 |
g |
15064408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 287 - 323
Target Start/End: Complemental strand, 15064266 - 15064230
Alignment:
| Q |
287 |
gttgagagattctagcttaatttgtccatgcatgcat |
323 |
Q |
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| T |
15064266 |
gttgagagattctagcttaatttgtccatgcatgcat |
15064230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 75 - 186
Target Start/End: Original strand, 30854165 - 30854278
Alignment:
| Q |
75 |
tgcgatttttcataatattaaggatcacaatgtagctcaacacaacatttgactaaga--tttttcatcaaatcaaggtaactgaccacaatattcagga |
172 |
Q |
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| T |
30854165 |
tgcgattttttataatatgaaggatcacaatgtagctgaactcaacatttgactgagattttttttatcaaatcaaggtaattgaacaaaatattaagga |
30854264 |
T |
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| Q |
173 |
agaaaacttgcaag |
186 |
Q |
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| T |
30854265 |
ggaaaacttgcaag |
30854278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 323
Target Start/End: Original strand, 30878618 - 30878650
Alignment:
| Q |
291 |
agagattctagcttaatttgtccatgcatgcat |
323 |
Q |
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| T |
30878618 |
agagattctagcttaatttgtccatgcatgcat |
30878650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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