View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1677_high_8 (Length: 296)

Name: NF1677_high_8
Description: NF1677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1677_high_8
NF1677_high_8
[»] chr4 (3 HSPs)
chr4 (18-280)||(6025429-6025691)
chr4 (18-103)||(42476894-42476978)
chr4 (22-209)||(26841847-26842036)
[»] chr7 (2 HSPs)
chr7 (18-137)||(3533389-3533506)
chr7 (22-192)||(36066428-36066597)
[»] chr1 (5 HSPs)
chr1 (18-209)||(11016281-11016471)
chr1 (18-137)||(36683369-36683487)
chr1 (75-152)||(20256446-20256523)
chr1 (84-135)||(25537165-25537216)
chr1 (68-209)||(48014961-48015101)
[»] chr6 (3 HSPs)
chr6 (18-137)||(21060183-21060301)
chr6 (18-137)||(21079500-21079618)
chr6 (84-132)||(6059926-6059974)
[»] chr8 (1 HSPs)
chr8 (22-103)||(6144523-6144603)
[»] scaffold0129 (1 HSPs)
scaffold0129 (78-152)||(7623-7697)
[»] chr5 (1 HSPs)
chr5 (78-152)||(28313360-28313434)
[»] chr3 (1 HSPs)
chr3 (161-209)||(10505803-10505851)


Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 6025429 - 6025691
Alignment:
Q  18 atgattgatatttcatttatttgagaagtgtatgatttgtcaatttcaaaacattaattttaaattatagcatgacaatttatattaaaagaaaaattag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||    
T  6025429 atgattgatatttcatttatttgagaagtgtatgatttgtcaatttcaaaacattaattctaaattatagcatgacaatttatattgaaaggaaaattag 6025528  T
Q  118 tgtatgtattagttttgattttgttattgatgattccaattcatttgaaatgcatagataatcattctaaatttttaaaatatatagtttaannnnnnna 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||       |    
T  6025529 tgtatgtattagttttgattttgttattgatgattccaattcatttgaaatgcatagataattattctaaatttttaaaatatacagtttaattttttta 6025628  T
Q  218 tgatcagctttgtggttaatgcttacttgaacataatttctatctttatatatgataattcat 280  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6025629 taatcagctttgtggttaatgcttacttgaacataatttctatctttatatatgataattcat 6025691  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 42476978 - 42476894
Alignment:
Q  18 atgattgatatttcatttatttgagaagtgtatgatttgtcaatttcaaaacattaattttaaattatagcatgacaatttatatt 103  Q
    ||||||||||||||||||||||||||||||||| ||  || ||||| || ||||||||| |||| ||||||||||  |||||||||    
T  42476978 atgattgatatttcatttatttgagaagtgtataatacgttaattttaagacattaattctaaa-tatagcatgaatatttatatt 42476894  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 209
Target Start/End: Complemental strand, 26842036 - 26841847
Alignment:
Q  22 ttgatatttcatttatttgagaagtgtatgatttgtcaatttcaaaacattaattttaaattatagcatg-acaatttatattaaaagaaaaattagtgt 120  Q
    ||||||||| |||| ||| |||||||||||||   | |||||  | ||||||||| ||||| ||| || | |||||||||||| ||||| || |||||||    
T  26842036 ttgatattttatttgtttaagaagtgtatgatacattaattttgagacattaattctaaataatatcacggacaatttatattgaaagagaagttagtgt 26841937  T
Q  121 atgtattagttttgattttgttattgatgattccaattcatttg-aaatgcatagataatcattctaaatttttaaaatatatagtttaa 209  Q
    | |||||| |||||||| | || |  |||||| | | ||||||| ||| ||  ||| ||| ||| ||||||||||| |||| ||||||||    
T  26841936 aagtattaattttgattctattttatatgatttctagtcatttgaaaaagcgcagagaattattttaaatttttaacatatgtagtttaa 26841847  T

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Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 3533389 - 3533506
Alignment:
Q  18 atgattgatatttcatttatttgagaagtgtatgatttgtcaatttcaaaacattaattttaaattatagcatgacaatttatattaaaagaaaaattag 117  Q
    |||||||||||| ||||||||||| |||||||| || ||| |||||  | ||||||||| ||||| |||||||||||||||||||| ||||| || ||||    
T  3533389 atgattgatatt-catttatttgaaaagtgtataatatgttaattttgagacattaattctaaat-atagcatgacaatttatattgaaagagaagttag 3533486  T
Q  118 tgtatgtattagttttgatt 137  Q
    | || |||||||||||||||    
T  3533487 tataagtattagttttgatt 3533506  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 22 - 192
Target Start/End: Complemental strand, 36066597 - 36066428
Alignment:
Q  22 ttgatatttcatttatttgagaagtgtatgatttgtcaatttcaaaacattaattttaaattatagcatgacaatttatattaaaagaaaaattagtgta 121  Q
    ||||||||| ||||||||||||||||||| ||     |||||  | ||||||||| ||||| |||||||||||||||||||| ||||| ||  |||||||    
T  36066597 ttgatattttatttatttgagaagtgtataatacaataattttgagacattaattctaaat-atagcatgacaatttatattgaaagagaaggtagtgta 36066499  T
Q  122 tgtattagttttgattttgttattgatgattccaattcatttgaaatgcatagataatcattctaaatttt 192  Q
     ||||||||||||||| | || |  |||||| ||| |  |||| |||||||||| ||| ||| ||||||||    
T  36066498 agtattagttttgattctattttatatgatttcaagtattttggaatgcatagagaattattttaaatttt 36066428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 8e-21; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 11016281 - 11016471
Alignment:
Q  18 atgattgatatttcatttatttgagaagtgtatgatttgtcaatttcaaaacattaattttaaattatagcatgacaatttatattaaaagaaaaattag 117  Q
    ||||||||||||||||||||||||||||||||| ||  || |||||  | ||||||||| |||| |||| |||||||||||||| |  |||| || |||     
T  11016281 atgattgatatttcatttatttgagaagtgtataatacgttaattttgagacattaattctaaa-tataacatgacaatttatactggaagagaagttat 11016379  T
Q  118 tgtatgtattagttttgattttgttattgatgattccaattcatttgaaatgcatagataatcattctaaatttttaaaatatatagtttaa 209  Q
    |||||||| |||||||||||   || |  |||||| ||| |  |||| ||| |||||||||| ||| ||||||||||| |||| | ||||||    
T  11016380 tgtatgtagtagttttgattcaattttatatgatttcaagtattttggaatccatagataattattttaaatttttaatatatgttgtttaa 11016471  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 36683487 - 36683369
Alignment:
Q  18 atgattgatatttcatttatttgagaagtgtatgatttgtcaatttcaaaacattaattttaaattatagcatgacaatttatattaaaagaaaaattag 117  Q
    ||||||||||||||||||||||||||||||||| ||  || |||||  | ||||||||| |||| |||||||||||||| |||||| | | | || ||||    
T  36683487 atgattgatatttcatttatttgagaagtgtataatacgttaattttgagacattaattctaaa-tatagcatgacaatctatattgacaaagaagttag 36683389  T
Q  118 tgtatgtattagttttgatt 137  Q
    |||| |||||||||||||||    
T  36683388 tgtaagtattagttttgatt 36683369  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 152
Target Start/End: Complemental strand, 20256523 - 20256446
Alignment:
Q  75 ttttaaattatagcatgacaatttatattaaaagaaaaattagtgtatgtattagttttgattttgttattgatgatt 152  Q
    |||||||| ||||||||||  |||||||  ||||  ||||||||| | ||||||||||||| || |||||||||||||    
T  20256523 ttttaaatgatagcatgacggtttatatcgaaagggaaattagtgcaagtattagttttgagttagttattgatgatt 20256446  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 135
Target Start/End: Original strand, 25537165 - 25537216
Alignment:
Q  84 atagcatgacaatttatattaaaagaaaaattagtgtatgtattagttttga 135  Q
    |||||||||||||||||||| |||  |||||||||| |||||||| ||||||    
T  25537165 atagcatgacaatttatattgaaaagaaaattagtgcatgtattaattttga 25537216  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 209
Target Start/End: Complemental strand, 48015101 - 48014961
Alignment:
Q  68 acattaattttaaattatagcatgacaatttatattaaaagaaaaattagtgtatgtattagttttgattttgttattgatgattccaattcatttgaaa 167  Q
    |||||| || |||||  ||||||| ||||||||||| || || |||||| |||| |||||| || | ||||| |||||||||||| ||| | ||||| ||    
T  48015101 acattagttataaatggtagcatggcaatttatattgaatgagaaattattgtaagtattaattgt-attttattattgatgatttcaaattatttggaa 48015003  T
Q  168 tgcatagataatcattctaaatttttaaaatatatagtttaa 209  Q
    ||  |||||||| ||| | || ||| || |||| ||||||||    
T  48015002 tgagtagataattatttttaactttaaagatatgtagtttaa 48014961  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 21060183 - 21060301
Alignment:
Q  18 atgattgatatttcatttatttgagaagtgtatgatttgtcaatttcaaaacattaattttaaattatagcatgacaatttatattaaaagaaaaattag 117  Q
    |||||||||||||||||||||||||||||| || ||   | |||||  | ||||||||| |||| ||||||||| | ||||||||| ||||| || ||||    
T  21060183 atgattgatatttcatttatttgagaagtgaataatacattaattttgagacattaattctaaa-tatagcatgcccatttatattgaaagagaagttag 21060281  T
Q  118 tgtatgtattagttttgatt 137  Q
    |||| |||| ||||||||||    
T  21060282 tgtacgtataagttttgatt 21060301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 21079500 - 21079618
Alignment:
Q  18 atgattgatatttcatttatttgagaagtgtatgatttgtcaatttcaaaacattaattttaaattatagcatgacaatttatattaaaagaaaaattag 117  Q
    ||||||||||||||||||||||||||||||||| ||   | |||||  | ||||||||| |||| ||||||||| | ||||||||| ||| | || ||||    
T  21079500 atgattgatatttcatttatttgagaagtgtataatacattaattttgagacattaattctaaa-tatagcatgcccatttatattgaaaaagaacttag 21079598  T
Q  118 tgtatgtattagttttgatt 137  Q
    |||| |||| ||||||||||    
T  21079599 tgtacgtataagttttgatt 21079618  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 84 - 132
Target Start/End: Complemental strand, 6059974 - 6059926
Alignment:
Q  84 atagcatgacaatttatattaaaagaaaaattagtgtatgtattagttt 132  Q
    |||||||| |||||||||||||||||||||||| || ||||||||||||    
T  6059974 atagcatgtcaatttatattaaaagaaaaattaatgcatgtattagttt 6059926  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 103
Target Start/End: Original strand, 6144523 - 6144603
Alignment:
Q  22 ttgatatttcatttatttgagaagtgtatgatttgtcaatttcaaaacattaattttaaattatagcatgacaatttatatt 103  Q
    ||||||||||||||||||||||||||||| ||  || |||||  | ||||||||| |||| ||||||||||  |||||||||    
T  6144523 ttgatatttcatttatttgagaagtgtataatacgttaattttgagacattaattctaaa-tatagcatgaatatttatatt 6144603  T

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Target: scaffold0129 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 152
Target Start/End: Complemental strand, 7697 - 7623
Alignment:
Q  78 taaattatagcatgacaatttatattaaaagaaaaattagtgtatgtattagttttgattttgttattgatgatt 152  Q
    ||||| ||||||||||  |||||||  |||| |||||||||| | ||||||||| ||| || |||||||||||||    
T  7697 taaatgatagcatgacggtttatatcgaaaggaaaattagtgcaagtattagttatgagttagttattgatgatt 7623  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 152
Target Start/End: Original strand, 28313360 - 28313434
Alignment:
Q  78 taaattatagcatgacaatttatattaaaagaaaaattagtgtatgtattagttttgattttgttattgatgatt 152  Q
    ||||| ||||||||||  |||||||| ||||  ||||||||| | ||||||||| ||| || |||||||||||||    
T  28313360 taaatgatagcatgacggtttatattgaaagtgaaattagtgcaagtattagttctgagttagttattgatgatt 28313434  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 10505851 - 10505803
Alignment:
Q  161 tttgaaatgcatagataatcattctaaatttttaaaatatatagtttaa 209  Q
    |||| |||||||||| ||||||| ||||||||||| |||| ||||||||    
T  10505851 tttggaatgcatagagaatcattttaaatttttaatatatttagtttaa 10505803  T

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