View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1677_low_1 (Length: 441)

Name: NF1677_low_1
Description: NF1677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1677_low_1
NF1677_low_1
[»] chr3 (2 HSPs)
chr3 (1-382)||(39427513-39427876)
chr3 (94-280)||(37462443-37462626)
[»] chr5 (2 HSPs)
chr5 (76-268)||(36224348-36224543)
chr5 (260-400)||(36225009-36225149)
[»] chr2 (22 HSPs)
chr2 (92-250)||(8579522-8579677)
chr2 (183-251)||(7611979-7612047)
chr2 (94-240)||(9061186-9061329)
chr2 (94-240)||(8573550-8573693)
chr2 (183-240)||(9364668-9364725)
chr2 (183-240)||(17566128-17566185)
chr2 (191-240)||(10347833-10347882)
chr2 (94-240)||(9065638-9065781)
chr2 (191-245)||(11987527-11987581)
chr2 (191-282)||(9291985-9292073)
chr2 (191-240)||(9321030-9321079)
chr2 (191-240)||(9328647-9328696)
chr2 (191-240)||(10335892-10335941)
chr2 (191-240)||(10353157-10353206)
chr2 (191-236)||(12018937-12018982)
chr2 (94-137)||(9274475-9274518)
chr2 (191-240)||(9284235-9284284)
chr2 (96-145)||(9291899-9291948)
chr2 (191-240)||(10371906-10371955)
chr2 (195-240)||(16269141-16269186)
chr2 (334-378)||(7612153-7612197)
chr2 (191-251)||(12006152-12006212)
[»] chr4 (2 HSPs)
chr4 (90-251)||(561172-561330)
chr4 (191-240)||(26574909-26574958)
[»] chr7 (3 HSPs)
chr7 (97-240)||(45243656-45243796)
chr7 (97-240)||(45237907-45238047)
chr7 (191-239)||(45230480-45230528)
[»] chr1 (4 HSPs)
chr1 (90-240)||(29443366-29443513)
chr1 (194-240)||(29453349-29453395)
chr1 (191-240)||(29423313-29423362)
chr1 (191-240)||(29467825-29467874)
[»] scaffold0667 (1 HSPs)
scaffold0667 (191-280)||(4519-4605)
[»] chr8 (1 HSPs)
chr8 (191-240)||(41966750-41966799)


Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 39427513 - 39427876
Alignment:
Q  1 cataggtaactttataacttttgagatgataccaaaacagcttcttcttaagcttcttcttaagatcactcatgaaatcacccctaaattctacttccaa 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||            |||||||| |||||||| |||||||||||||||||| |||||||||    
T  39427513 cataggtaactttataacttttgagataataccaaaacagct------------tcttcttaggatcactcttgaaatcacccctaaattttacttccaa 39427600  T
Q  101 cagaactttacttctatcactggaataacataaaggcatcaaagacattaaaggtgaattgaaacaccattgacctacaaatgtaaacaatttacaccaa 200  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||    
T  39427601 cagaactttacttctatcactggaataacataaaggcttcaaagacattaaaggtgaattgaaacaccattcccctacaaaagtaaacaatttacaccaa 39427700  T
Q  201 ctatttctaaatccatattctttcattacccaaacatcaaacttattagttccattacaactcacagtcatagaaagacacttccccaaaatagaaacat 300  Q
    |||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||  |||||||    
T  39427701 ctatatctatatccatattctttcatcacccaaacatcaaacttattagttccattacaactcacagtaatacaaagacactttcccaaaagcgaaacat 39427800  T
Q  301 atttaatctcgcttgtagcttcttcaagatcaggaagaggaacctcactgaaaatctcttgtgttatgttaaaggcgaggat 382  Q
    ||||||||||||||||||||      |  |||||||||||||||||| ||||||||||||| ||||||||||| ||||||||    
T  39427801 atttaatctcgcttgtagct------atttcaggaagaggaacctcattgaaaatctcttgagttatgttaaacgcgaggat 39427876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 94 - 280
Target Start/End: Original strand, 37462443 - 37462626
Alignment:
Q  94 cttccaacagaactttacttctatcactggaataacataaaggcatcaaagacattaaaggtgaattgaaacaccattgacctacaaatgtaaacaattt 193  Q
    ||||||||| ||| ||||||| |||||| ||||||||||||||| |||||||  | ||||||||| |||||||| ||| | | |||   ||| | | |||    
T  37462443 cttccaacaaaaccttacttccatcactagaataacataaaggcctcaaagatttcaaaggtgaagtgaaacacgatttatccaca---gtacaaagttt 37462539  T
Q  194 acaccaactatttctaaatccatattctttcattacccaaacatcaaacttattagttccattacaactcacagtcatagaaagaca 280  Q
    ||||||||||| |||| |||||||||||||||| |||||||||||||| ||| |||||   ||| || ||||||||||| |||||||    
T  37462540 acaccaactatctctagatccatattctttcatcacccaaacatcaaatttagtagtttttttataattcacagtcatacaaagaca 37462626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 76 - 268
Target Start/End: Original strand, 36224348 - 36224543
Alignment:
Q  76 aatcacccctaaattctacttccaacagaactttacttctatcactggaataacataaaggcatcaaagacattaa------aggtgaattgaaacacca 169  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| || ||      |||||||| |||| ||||    
T  36224348 aatcaccccaaaattctacttccaacagaactttacttctatcactggaataacatgaaggcttcaaagatatcaatttaaaaggtgaatcgaaatacca 36224447  T
Q  170 ttgacctacaaatgtaaacaatttacaccaactatttctaaatccatattctttcattacccaaacatcaaacttattagttccattacaactcacagt 268  Q
    ||  || ||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||    
T  36224448 tt--cccacaaa-gtaaacaatttacaccaactatctctaaatccatattctttcatcacccaaacatcaaatttattagttccataacaactcacagt 36224543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 260 - 400
Target Start/End: Original strand, 36225009 - 36225149
Alignment:
Q  260 actcacagtcatagaaagacacttccccaaaatagaaacatatttaatctcgcttgtagcttcttcaagatcaggaagaggaacctcactgaaaatctct 359  Q
    ||||||||||||| |||||||||  |||||||  |||||||||||||||| ||||||| || ||||| ||| |||||||||||||||| ||||||||||     
T  36225009 actcacagtcatacaaagacactatcccaaaag-gaaacatatttaatcttgcttgtaactacttcaggattaggaagaggaacctcattgaaaatctc- 36225106  T
Q  360 tgtgttatgttaaaggcgaggat---acgcttaccaagattccc 400  Q
     ||||||||||||| ||||||||   |||| |||||||||||||    
T  36225107 -gtgttatgttaaacgcgaggattaaacgcgtaccaagattccc 36225149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 92 - 250
Target Start/End: Complemental strand, 8579677 - 8579522
Alignment:
Q  92 tacttccaacagaactttacttctatcactggaataacataaaggcatcaaagacattaaaggtgaattgaaacaccattgacctacaaatgtaaacaat 191  Q
    |||||||||||||||||||||||||||||| |||||||| |||||| |||||||  | ||||||  |||||| ||| | |  ||| |||| |||||||||    
T  8579677 tacttccaacagaactttacttctatcactagaataacacaaaggcttcaaagatctcaaaggtttattgaagcacgaat--cct-caaaagtaaacaat 8579581  T
Q  192 ttacaccaactatttctaaatccatattctttcattacccaaacatcaaacttattagt 250  Q
    ||||||||||||| |||||||||||||| |||||| |||||||| |||| |||| ||||    
T  8579580 ttacaccaactatctctaaatccatattttttcatcacccaaacctcaaccttagtagt 8579522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 7611979 - 7612047
Alignment:
Q  183 gtaaacaatttacaccaactatttctaaatccatattctttcattacccaaacatcaaacttattagtt 251  Q
    |||||||||||||||||||||| | | ||||||||||||||||| |||||||||||||||||| |||||    
T  7611979 gtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaaacttaatagtt 7612047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 94 - 240
Target Start/End: Complemental strand, 9061329 - 9061186
Alignment:
Q  94 cttccaacagaactttacttctatcactggaataacataaaggcatcaaagacattaaaggtgaattgaaacaccattgacctacaaatgtaaacaattt 193  Q
    ||||||||||||| |||| || |||||| ||||||||||| ||| ||||| |    |||||||||||||||||| ||| |   || || ||||| | |||    
T  9061329 cttccaacagaaccttacctccatcactagaataacataacggcctcaaaaagtccaaaggtgaattgaaacacgattta---accaaagtaaaaagttt 9061233  T
Q  194 acaccaactatttctaaatccatattctttcattacccaaacatcaa 240  Q
    ||||||||||| |||| ||||||| |||||||| |||||||||||||    
T  9061232 acaccaactatctctagatccatagtctttcatcacccaaacatcaa 9061186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 94 - 240
Target Start/End: Complemental strand, 8573693 - 8573550
Alignment:
Q  94 cttccaacagaactttacttctatcactggaataacataaaggcatcaaagacattaaaggtgaattgaaacaccattgacctacaaatgtaaacaattt 193  Q
    ||||||||||||| ||||||| |||||| ||||||| ||||||| || ||||  | ||| ||| | |||||||| ||| |   || || ||||| | |||    
T  8573693 cttccaacagaaccttacttccatcactagaataacctaaaggcctcgaagatttaaaatgtggagtgaaacacgattta---acgaaagtaaaaagttt 8573597  T
Q  194 acaccaactatttctaaatccatattctttcattacccaaacatcaa 240  Q
    ||||||||||| |||| | |||||||||||||| |||||||||||||    
T  8573596 acaccaactatctctagaaccatattctttcatcacccaaacatcaa 8573550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 9364668 - 9364725
Alignment:
Q  183 gtaaacaatttacaccaactatttctaaatccatattctttcattacccaaacatcaa 240  Q
    |||||||||||||||||||||| | | ||||||||||||||||| |||||||||||||    
T  9364668 gtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaa 9364725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 183 - 240
Target Start/End: Complemental strand, 17566185 - 17566128
Alignment:
Q  183 gtaaacaatttacaccaactatttctaaatccatattctttcattacccaaacatcaa 240  Q
    |||||||||||||||||| ||| |||||||||||||||||| || |||||||||||||    
T  17566185 gtaaacaatttacaccaattatctctaaatccatattctttaatcacccaaacatcaa 17566128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 10347833 - 10347882
Alignment:
Q  191 tttacaccaactatttctaaatccatattctttcattacccaaacatcaa 240  Q
    |||||||||||||| |||| |||||||||||||||| |||||||||||||    
T  10347833 tttacaccaactatctctacatccatattctttcatgacccaaacatcaa 10347882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 240
Target Start/End: Complemental strand, 9065781 - 9065638
Alignment:
Q  94 cttccaacagaactttacttctatcactggaataacataaaggcatcaaagacattaaaggtgaattgaaacaccatt-gacctacaaatgtaaacaatt 192  Q
    ||||||||||||| ||||||| ||||| |||||||| || |||| || |||   | ||| |||||| ||||||  ||| ||||    || ||||| | ||    
T  9065781 cttccaacagaaccttacttccatcaccggaataacctagaggcctcgaagctgtcaaatgtgaatggaaacaagatttgacc----aaagtaaaaagtt 9065686  T
Q  193 tacaccaactatttctaaatccatattctttcattacccaaacatcaa 240  Q
    |||||||||||| |||| |||||||||||||||| |||||| ||||||    
T  9065685 tacaccaactatctctagatccatattctttcatcacccaaccatcaa 9065638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 191 - 245
Target Start/End: Complemental strand, 11987581 - 11987527
Alignment:
Q  191 tttacaccaactatttctaaatccatattctttcattacccaaacatcaaactta 245  Q
    |||||||||||||| |||| |||||||||||||||| ||||||| ||||| ||||    
T  11987581 tttacaccaactatctctacatccatattctttcatcacccaaatatcaatctta 11987527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 191 - 282
Target Start/End: Original strand, 9291985 - 9292073
Alignment:
Q  191 tttacaccaactatttctaaatccatattctttcattacccaaacatcaaacttattagttccattacaactcacagtcatagaaagacact 282  Q
    |||||||||||||| |||| | ||||||| |||||| |||||||||||||  ||| ||||| |||   || ||||||||||| |||||||||    
T  9291985 tttacaccaactatctctagaaccatattgtttcatcacccaaacatcaattttagtagtttcat---aattcacagtcatacaaagacact 9292073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 9321030 - 9321079
Alignment:
Q  191 tttacaccaactatttctaaatccatattctttcattacccaaacatcaa 240  Q
    |||||||||||||| |||| | |||||||||||||| |||||||||||||    
T  9321030 tttacaccaactatctctagaaccatattctttcatcacccaaacatcaa 9321079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 9328647 - 9328696
Alignment:
Q  191 tttacaccaactatttctaaatccatattctttcattacccaaacatcaa 240  Q
    |||||||||||||| |||| ||||||||| |||||| |||||||||||||    
T  9328647 tttacaccaactatctctatatccatattgtttcatcacccaaacatcaa 9328696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 10335892 - 10335941
Alignment:
Q  191 tttacaccaactatttctaaatccatattctttcattacccaaacatcaa 240  Q
    |||||||||||||| |||| | |||||||||||||| |||||||||||||    
T  10335892 tttacaccaactatctctacagccatattctttcatcacccaaacatcaa 10335941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 10353157 - 10353206
Alignment:
Q  191 tttacaccaactatttctaaatccatattctttcattacccaaacatcaa 240  Q
    |||||||||||| | |||| |||||||||||||||| |||||||||||||    
T  10353157 tttacaccaactctctctacatccatattctttcatcacccaaacatcaa 10353206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 191 - 236
Target Start/End: Complemental strand, 12018982 - 12018937
Alignment:
Q  191 tttacaccaactatttctaaatccatattctttcattacccaaaca 236  Q
    |||||||||||||| |||| |||||||||||||||| |||||||||    
T  12018982 tttacaccaactatctctacatccatattctttcatcacccaaaca 12018937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 137
Target Start/End: Original strand, 9274475 - 9274518
Alignment:
Q  94 cttccaacagaactttacttctatcactggaataacataaaggc 137  Q
    ||||||||||||| ||||||| |||||| |||||||||||||||    
T  9274475 cttccaacagaaccttacttccatcactagaataacataaaggc 9274518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 240
Target Start/End: Complemental strand, 9284284 - 9284235
Alignment:
Q  191 tttacaccaactatttctaaatccatattctttcattacccaaacatcaa 240  Q
    |||||||||||||| |||| | |||||||||||||| |||||||| ||||    
T  9284284 tttacaccaactatctctagaaccatattctttcatcacccaaacgtcaa 9284235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 9291899 - 9291948
Alignment:
Q  96 tccaacagaactttacttctatcactggaataacataaaggcatcaaaga 145  Q
    ||||||||||| ||||||| ||| || ||||||||||||||| |||||||    
T  9291899 tccaacagaaccttacttccatccctagaataacataaaggcctcaaaga 9291948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 10371906 - 10371955
Alignment:
Q  191 tttacaccaactatttctaaatccatattctttcattacccaaacatcaa 240  Q
    |||||||||||||| |||| | |||||||||||||| ||||||| |||||    
T  10371906 tttacaccaactatctctagaaccatattctttcatcacccaaatatcaa 10371955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 16269141 - 16269186
Alignment:
Q  195 caccaactatttctaaatccatattctttcattacccaaacatcaa 240  Q
    |||||||||| |||| ||||||| |||||||| |||||||||||||    
T  16269141 caccaactatctctatatccatactctttcatcacccaaacatcaa 16269186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 378
Target Start/End: Original strand, 7612153 - 7612197
Alignment:
Q  334 gaagaggaacctcactgaaaatctcttgtgttatgttaaaggcga 378  Q
    |||||||||||||| |||||||||||||||| | |||||| ||||    
T  7612153 gaagaggaacctcattgaaaatctcttgtgtaaggttaaaagcga 7612197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 251
Target Start/End: Complemental strand, 12006212 - 12006152
Alignment:
Q  191 tttacaccaactatttctaaatccatattctttcattacccaaacatcaaacttattagtt 251  Q
    |||||||||||||| | || | |||||||||||||| ||||| ||||||| |||| |||||    
T  12006212 tttacaccaactatctttacaaccatattctttcatcacccatacatcaatcttagtagtt 12006152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 90 - 251
Target Start/End: Original strand, 561172 - 561330
Alignment:
Q  90 tctacttccaacagaactttacttctatcactggaataacataaaggcatcaaagacattaaaggtgaattgaaacaccattgacctacaaatgtaaaca 189  Q
    |||||||||||||||||||||||||||||||  ||||||| ||||||| || | |   | ||||||  | ||||| ||  ||  ||| |||| |||||||    
T  561172 tctacttccaacagaactttacttctatcaccagaataacctaaaggcttccatggtgtaaaaggtctactgaaaaacactt--cctccaaa-gtaaaca 561268  T
Q  190 atttacaccaactatttctaaatccatattctttcattacccaaacatcaaacttattagtt 251  Q
    ||  ||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||    
T  561269 atacacaccaactatctctaaatccatattctttcattacccaaacatcaaccttagtagtt 561330  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 26574909 - 26574958
Alignment:
Q  191 tttacaccaactatttctaaatccatattctttcattacccaaacatcaa 240  Q
    |||||||||||||| |||| |||||||||||||||| |||||||||||||    
T  26574909 tttacaccaactatctctacatccatattctttcatcacccaaacatcaa 26574958  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 97 - 240
Target Start/End: Original strand, 45243656 - 45243796
Alignment:
Q  97 ccaacagaactttacttctatcactggaataacataaaggcatcaaagacattaaaggtgaattgaaacaccattgacctacaaatgtaaacaatttaca 196  Q
    |||||||||||||||||| |||||| ||||||||||||||| |||||||    ||| |  ||||||||||| ||| |   || || ||||| | ||||||    
T  45243656 ccaacagaactttacttcgatcactcgaataacataaaggcctcaaagattccaaatgaaaattgaaacacgattta---accaaagtaaaaagtttaca 45243752  T
Q  197 ccaactatttctaaatccatattctttcattacccaaacatcaa 240  Q
    |||| ||| |||| | |||||||||||||| |||||||||||||    
T  45243753 ccaaatatctctagaaccatattctttcatcacccaaacatcaa 45243796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 97 - 240
Target Start/End: Original strand, 45237907 - 45238047
Alignment:
Q  97 ccaacagaactttacttctatcactggaataacataaaggcatcaaagacattaaaggtgaattgaaacaccattgacctacaaatgtaaacaatttaca 196  Q
    |||||||||||||||||| ||| || ||||||||||||||| ||||  |  | | | |  ||||||||||| ||| | ||| |   ||||| | ||||||    
T  45237907 ccaacagaactttacttcgatcgcttgaataacataaaggcctcaacaatttcagatgaaaattgaaacacgattcaactaaa---gtaaaaagtttaca 45238003  T
Q  197 ccaactatttctaaatccatattctttcattacccaaacatcaa 240  Q
    |||||||| |||| |||||||||||||||| |||||||||||||    
T  45238004 ccaactatctctagatccatattctttcatcacccaaacatcaa 45238047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 45230480 - 45230528
Alignment:
Q  191 tttacaccaactatttctaaatccatattctttcattacccaaacatca 239  Q
    |||||||||||||| |||| | |||||||||||||| ||||||||||||    
T  45230480 tttacaccaactatctctagaaccatattctttcatcacccaaacatca 45230528  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 240
Target Start/End: Complemental strand, 29443513 - 29443366
Alignment:
Q  90 tctacttccaacagaactttacttctatcactggaataacataaaggcatcaaagacattaaaggtgaattgaaacaccattgacctacaaatgtaaaca 189  Q
    ||||||| |||||||||  |||||||||| || ||||||| ||||  | ||||||   | |||||| || |||||||| ||| | |  |||| ||||| |    
T  29443513 tctacttgcaacagaaccatacttctatcgctcgaataacctaaaatcctcaaagctctcaaaggtaaactgaaacacgattcagc--caaa-gtaaaaa 29443417  T
Q  190 atttacaccaactatttctaaatccatattctttcattacccaaacatcaa 240  Q
     ||||||||| |||| |||| |||||||||||||||| |||||||||||||    
T  29443416 gtttacaccagctatctctacatccatattctttcatcacccaaacatcaa 29443366  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 29453395 - 29453349
Alignment:
Q  194 acaccaactatttctaaatccatattctttcattacccaaacatcaa 240  Q
    |||||| |||| |||| |||||||||||||||| |||||||||||||    
T  29453395 acaccagctatctctacatccatattctttcatcacccaaacatcaa 29453349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 29423313 - 29423362
Alignment:
Q  191 tttacaccaactatttctaaatccatattctttcattacccaaacatcaa 240  Q
    ||||||||| |||| |||| |||||||||||||||| | |||||||||||    
T  29423313 tttacaccagctatctctacatccatattctttcatcagccaaacatcaa 29423362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 240
Target Start/End: Complemental strand, 29467874 - 29467825
Alignment:
Q  191 tttacaccaactatttctaaatccatattctttcattacccaaacatcaa 240  Q
    ||||| |||||||| |||| |||||||||||||||| | |||||||||||    
T  29467874 tttacgccaactatctctacatccatattctttcatcaaccaaacatcaa 29467825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 280
Target Start/End: Original strand, 4519 - 4605
Alignment:
Q  191 tttacaccaactatttctaaatccatattctttcattacccaaacatcaaacttattagttccattacaactcacagtcatagaaagaca 280  Q
    |||||||||||||| | | |||||||||| |||||| |||||||||||||  ||| ||||| |||   || ||||||||||| |||||||    
T  4519 tttacaccaactatcttttaatccatattgtttcatcacccaaacatcaattttagtagtttcat---aattcacagtcatacaaagaca 4605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 240
Target Start/End: Complemental strand, 41966799 - 41966750
Alignment:
Q  191 tttacaccaactatttctaaatccatattctttcattacccaaacatcaa 240  Q
    ||||||||| |||| |||| ||| |||||||||||| |||||||||||||    
T  41966799 tttacaccagctatctctagatcgatattctttcatcacccaaacatcaa 41966750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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