View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1677_low_11 (Length: 251)
Name: NF1677_low_11
Description: NF1677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1677_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 18107955 - 18107716
Alignment:
| Q |
1 |
tttggaataggtttgctcacaaagaccaaacctcaaaacatgataaaagaacaaagccaaagaaacattaacatcagaaattggattcaccaaacccaac |
100 |
Q |
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| T |
18107955 |
tttggaataggtctgctcacaaagaccaaacctcaaaacatgataaaagaacaaagccaaagaaaaattaacatcagaaattggattcaccaaacccaac |
18107856 |
T |
|
| Q |
101 |
ttgggaagatgttactagaatacaaaatcagcagcatacctaaagagttaccaaacttgcactgttgcaaactatagtacatccatacctaccttctaaa |
200 |
Q |
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| T |
18107855 |
ttgggaagatgttactagtatacaaaatc---agcatacctaaagagttaccaaacttgcactgttccaaactatagtacatccatacctaccttctaaa |
18107759 |
T |
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| Q |
201 |
ttttcaatttctgcatttatatttcatattaggcagtattatc |
243 |
Q |
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| T |
18107758 |
ttttcaatttctgcatttatatttcatattaggcagtattatc |
18107716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 18138027 - 18138265
Alignment:
| Q |
1 |
tttggaataggtttg-ctcacaaagaccaaacctcaaaacatgataaaagaacaaagccaaagaaacattaacatcagaaattggattcaccaaacccaa |
99 |
Q |
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| T |
18138027 |
tttggaataggtttttctcacaaagaccaa-cctcaaaacatgataaaagaacgaagccaaagaaaaattaacatcagaaattggattcaccaaacccaa |
18138125 |
T |
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| Q |
100 |
cttgggaagatgttactagaatacaaaatcagcagcatacctaaagagttaccaaacttgcactgttgcaaactatagtacatccatacctaccttctaa |
199 |
Q |
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| T |
18138126 |
cttgggaagatgttactagtatacaaaat---caggatatctaaagagttacctaacttgcactgttccaaactatagtacattcatacctaccttctga |
18138222 |
T |
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| Q |
200 |
attttcaatttctgcatttatatttcatattaggcagtattat |
242 |
Q |
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| T |
18138223 |
aatttcaatttctgcatttatatttattattaggcagtattat |
18138265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 29 - 242
Target Start/End: Complemental strand, 18098397 - 18098195
Alignment:
| Q |
29 |
aacctcaaaacatgataaaagaacaaagccaaagaaacattaacatcagaaattggattcaccaaacccaacttgggaagatgttactagaatacaaaat |
128 |
Q |
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| T |
18098397 |
aacctcaaaacaggataaaagaacaaagccatagaaacatta---tcagaacttggattcaccaaacccgacctgggaagatgttactataa-----aat |
18098306 |
T |
|
| Q |
129 |
cagcagcatacctaaagagttaccaaacttgcactgttgcaaactatagtacatccatacctaccttctaaattttcaatttctgcatttatatttcata |
228 |
Q |
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||| | ||| ||||||||||| | ||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| || |
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| T |
18098305 |
cagga-cat--ctaaagagttatctaacttttactgttccaaactatagtacattgatacctaccttctaaattttcaatttctgcattgatatttccta |
18098209 |
T |
|
| Q |
229 |
ttaggcagtattat |
242 |
Q |
| |
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|||| ||||||||| |
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| T |
18098208 |
ttagacagtattat |
18098195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 242
Target Start/End: Complemental strand, 18082957 - 18082900
Alignment:
| Q |
185 |
atacctaccttctaaattttcaatttctgcatttatatttcatattaggcagtattat |
242 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
18082957 |
atacctaccttctaaattttcaatttctgcattgatatttcctattaggcagtattat |
18082900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 15951736 - 15951824
Alignment:
| Q |
1 |
tttggaataggttt-gctcacaaagaccaaacctcaaaacatgataaaagaacaaagccaaagaaacattaacatcagaaattggattcac |
90 |
Q |
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|||||||||||||| ||||||||||||||| ||| ||||||||||||||||| ||||| |||||| | |||||||||||||||||||||| |
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| T |
15951736 |
tttggaataggttttgctcacaaagaccaa-cctttaaacatgataaaagaacgaagccgaagaaa-aataacatcagaaattggattcac |
15951824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 11547626 - 11547683
Alignment:
| Q |
168 |
caaactatagtacatccatacctaccttctaaattttcaatttctgcatttatatttc |
225 |
Q |
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||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||| |
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| T |
11547626 |
caaactatagtacattgatacataccttctaaatttccaatttctgcatttatatttc |
11547683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 128
Target Start/End: Complemental strand, 18083074 - 18082978
Alignment:
| Q |
29 |
aacctcaaaacatgataaaagaacaaagccaaagaaacattaacatcagaaattggattcaccaaacccaacttgggaagatgttactagaatacaaaat |
128 |
Q |
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|||||||||||| | |||||||||||||||| ||||||||| |||||| |||||||||||||||| || |||||||||||| ||| ||||||||| |
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| T |
18083074 |
aacctcaaaacaagttaaaagaacaaagccatagaaacatt---atcagagcttggattcaccaaacctgacctgggaagatgttcctaatatacaaaat |
18082978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 11552387 - 11552442
Alignment:
| Q |
168 |
caaactatagtacatccatacctaccttctaaattttcaatttctgcatttatatt |
223 |
Q |
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||||||||||||||| |||| |||||| ||||||| ||||||||||||||||||| |
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| T |
11552387 |
caaactatagtacattgatacgtaccttttaaatttccaatttctgcatttatatt |
11552442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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