View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1677_low_16 (Length: 240)
Name: NF1677_low_16
Description: NF1677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1677_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 9649596 - 9649373
Alignment:
| Q |
1 |
gcatatactactacaggattccaagattttcatgagacaaaaacaaactaaagatggattagaactcttcaatacctnnnnnnntggaaaggttaaatga |
100 |
Q |
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| T |
9649596 |
gcatatactactacaggattccaagattttcatgagacaaaaacaaactaaagatggattagaactcttcaatacctaaaaaaatggaaaggttaaatga |
9649497 |
T |
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| Q |
101 |
gaacaagtgttcattcacaaagataattggtgccaatcatagaagcgcatcgacttggaatcagtggttgatgaattgaaaagaaaaccgtcggtttgga |
200 |
Q |
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| T |
9649496 |
gaacaagtgttcattcacaaagataattggtgccaatcatagaagcgcatcgacttggaatcagtggttgatgaattgaaaagaaaaccgtcggtttgga |
9649397 |
T |
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| Q |
201 |
aaggtaaacatttgtctttagaag |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
9649396 |
aaggtaaacatttgtctttagaag |
9649373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 9661020 - 9660799
Alignment:
| Q |
1 |
gcatatactactacaggattccaagattttcatgagacaaaaacaaactaaa-gatggattagaactcttcaatacctnnnnnnn-tggaaaggttaaat |
98 |
Q |
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|||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
9661020 |
gcatatactaatacaggattccaagattttcatgagactaaaacaaactaaaagatggattagaactcttcaatacctaaaaaaaatggaaaggttaaat |
9660921 |
T |
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| Q |
99 |
gagaacaagtgttcattcacaaagataattggtgccaatcatagaagcgcatcgacttggaa-tcagtggttgatgaattgaaaagaaaaccgtcggttt |
197 |
Q |
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| T |
9660920 |
aagaacaagtggtcattcacaaaggtaataggtgccaatcatagaagcgtatcaacttggaagccggtggttgaagaattgaaaagaaaactgtccattt |
9660821 |
T |
|
| Q |
198 |
ggaaaggtaaacatttgtcttt |
219 |
Q |
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| T |
9660820 |
gggaaggtaaacatttgtcttt |
9660799 |
T |
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