View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1677_low_17 (Length: 236)
Name: NF1677_low_17
Description: NF1677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1677_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 80 - 220
Target Start/End: Original strand, 18083715 - 18083855
Alignment:
| Q |
80 |
gaagcacatttcatacaaagttagctatggaaaaccactaatgtcattaaagatttacaattgagtttatttataaactactaactgagaaattttgaac |
179 |
Q |
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| T |
18083715 |
gaagcacatttgatacaaagtaagctatggaaaaccacaaatgtcattaatgacttacaattgagtttatttataacatactaactgagaagttttgaac |
18083814 |
T |
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| Q |
180 |
ttaaaatccatctcatgtaagctgaagatttaaccatatat |
220 |
Q |
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| T |
18083815 |
ttaaaatccatgtcgtgaaagccaaagatttaaccatatat |
18083855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 56 - 220
Target Start/End: Original strand, 18099162 - 18099323
Alignment:
| Q |
56 |
tttaagaagaaaatttagataactg-aagcacatttcatacaaagttagctatggaaaaccactaatgtcattaaagatttacaattgagtttatttata |
154 |
Q |
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| T |
18099162 |
tttaaaaagaaaatttagatcactggaagcacatttcatacaaagtaagctatggaaaaccacaaatgtcattaatgacttacaatcaag----tttata |
18099257 |
T |
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| Q |
155 |
aactactaactgagaaattttgaacttaaaatccatctcatgtaagctgaagatttaaccatatat |
220 |
Q |
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| T |
18099258 |
acacactaactgagaagtttttaacttaaaatccatgttgtgaaagccaaagatttaaccatatat |
18099323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 18108014 - 18108047
Alignment:
| Q |
1 |
tccaatcctaccgtcaaaccatgagacgaaaaca |
34 |
Q |
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| T |
18108014 |
tccaatcctaccgtcaaaccatgagacgaaaaca |
18108047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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