View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1677_low_2 (Length: 409)
Name: NF1677_low_2
Description: NF1677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1677_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 25498596 - 25498203
Alignment:
| Q |
1 |
gttggtggtgaacatagatcatcattgttacaagttgtgagcattgttccagcactagcaggtggagatttgtttacaaatcaaggcttttatgttaagg |
100 |
Q |
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| T |
25498596 |
gttggtggtgaacatagatcatcattgttacaagttgtgagcattgttccagcactagcaggtggagatttgtttacaaatcaaggcttttatgttaagg |
25498497 |
T |
|
| Q |
101 |
tttctgattcatcacatgccacttatgtctctctccctgatgaacatgatgatctaatccttagtgacaagattcagttaggccagtttgtttttgttga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25498496 |
tttctgattcatcacatgccacttatgtctctctccctgatgaacatgatgatctaatcctaagtgacaagattcagttaggccagtttgtttttgttga |
25498397 |
T |
|
| Q |
201 |
tcggttcgaagctgcttcgcctgttccgattcttcgtggtgttaggcctgttcctggaagacatgcttgtgttggaacacctgaagatattgttgcaact |
300 |
Q |
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| T |
25498396 |
tcggttcgaagctgcttcgcctgttccgattcttcgtggtgttaggcctgttcctggaagacatgcttgtgttggaacacctgaagatattgttgcaact |
25498297 |
T |
|
| Q |
301 |
aactcacttggttttcttagcaatgcttctgaggttaaggttaagaggaatggtgtttgttccaagtcctctccaatgaaagtgttggagaatc |
394 |
Q |
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| T |
25498296 |
aactcacttggttttcttagcaatgcttctgaggttaaggttaagaggaatggtgtttgttccaagtcctctccaatgaaagtgttggagaatc |
25498203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 4 - 296
Target Start/End: Complemental strand, 42469027 - 42468732
Alignment:
| Q |
4 |
ggtggtgaacatagatcatcattgttacaagttgtgagcattgttccagcactagc---aggtggagatttgtttacaaatcaaggcttttatgttaagg |
100 |
Q |
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||||||||||| ||||||||| ||||||||||||| ||||||||||||||||| || |||||| || | ||| |||||||||| |||||| |||||| |
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| T |
42469027 |
ggtggtgaacacagatcatcactgttacaagttgttagcattgttccagcacttgcttcaggtggcgaactttttccaaatcaaggtttttatcttaagg |
42468928 |
T |
|
| Q |
101 |
tttctgattcatcacatgccacttatgtctctctccctgatgaacatgatgatctaatccttagtgacaagattcagttaggccagtttgtttttgttga |
200 |
Q |
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||||||||||||| ||||| |||||||| ||| | |||||||||||||||||| | || | ||||| || ||||| || || ||||||||||||||||| |
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| T |
42468927 |
tttctgattcatctcatgctacttatgtttctttacctgatgaacatgatgatttgattttgagtgataaaattcaattgggtcagtttgtttttgttga |
42468828 |
T |
|
| Q |
201 |
tcggttcgaagctgcttcgcctgttccgattcttcgtggtgttaggcctgttcctggaagacatgcttgtgttggaacacctgaagatattgttgc |
296 |
Q |
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| T |
42468827 |
tcgttttgaagcttcttcacctgttcctgtaattaggggtgttaaacctgttcctggtagacatccttgtgttggtacacctgaggatattgttgc |
42468732 |
T |
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