View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1677_low_3 (Length: 379)
Name: NF1677_low_3
Description: NF1677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1677_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-168; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 13 - 362
Target Start/End: Original strand, 3021220 - 3021566
Alignment:
| Q |
13 |
aatatcgttaacaaaaataataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgacgttgctgcacttgctctta |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
3021220 |
aatatcgttaacaaaaataataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgatgttgctgcacttactctta |
3021319 |
T |
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| Q |
113 |
aggggaaatcagcctgtcttaattttgctgactctgcatggcggttgaggttgccggagtcgaatgatgtgatggagataaggagggcggcgatggaggc |
212 |
Q |
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| T |
3021320 |
aaggaaaatcagcttgtcttaattttgctgactctgcatggcggttgaggttgccggagtcgaatgatgcgacggagataaggagggcggcgatggaggc |
3021419 |
T |
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| Q |
213 |
tgctcagttgtttgcggttgaagacaagcagcaatgttgtgttaccgttgaagatggagtgtttatggacatggaagattccaagaatatgctagaagca |
312 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3021420 |
tgctcagttgtttgcggttgaagaca---agcaatgttgtgttaccgttgaagatggagtgtttatggacatggaagattccaagaatatgctagaagca |
3021516 |
T |
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| Q |
313 |
caggttccggtgatgtcatcagaatttgaagacatgcatcatttgcttct |
362 |
Q |
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| T |
3021517 |
caggttccagtggtgtcatcagaatttgaagacatgcatcatttgcttct |
3021566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 13 - 362
Target Start/End: Original strand, 3038089 - 3038435
Alignment:
| Q |
13 |
aatatcgttaacaaaaataataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgacgttgctgcacttgctctta |
112 |
Q |
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| T |
3038089 |
aatatcgttaacaaaaataataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgatgttgctgcacttactctta |
3038188 |
T |
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| Q |
113 |
aggggaaatcagcctgtcttaattttgctgactctgcatggcggttgaggttgccggagtcgaatgatgtgatggagataaggagggcggcgatggaggc |
212 |
Q |
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| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
3038189 |
aaggaaaatcagcttgtcttaattttgctgactctgcatggcggttgaggttgccggagtcgaatgatgcgacggagataaggagggcggcgatggaggc |
3038288 |
T |
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| Q |
213 |
tgctcagttgtttgcggttgaagacaagcagcaatgttgtgttaccgttgaagatggagtgtttatggacatggaagattccaagaatatgctagaagca |
312 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3038289 |
tgctcagttgtttgcggttgaagaca---agcaatgttgtgttaccgttgaagatggagtgtttatggacatggaagattccaagaatatgctagaagca |
3038385 |
T |
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| Q |
313 |
caggttccggtgatgtcatcagaatttgaagacatgcatcatttgcttct |
362 |
Q |
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| T |
3038386 |
caggttccagtggtgtcatcagaatttgaagacatgcatcatttgcttct |
3038435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 3030439 - 3030637
Alignment:
| Q |
18 |
cgttaacaaaaataataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgacgttgctgcacttgctcttaagggg |
117 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| || |
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| T |
3030439 |
cgttaacaaaaacaataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgatgttgctgcacttactcttaaagga |
3030538 |
T |
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| Q |
118 |
aaatcagcctgtcttaattttgctgactctgcatggcggttgaggttgccggagtcgaatgatgtgatggagataaggagggcggcgatggaggctgct |
216 |
Q |
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| T |
3030539 |
aaatcagcttgtcttaattttgctgactctgcatggcggttgacgttgccggagtcaaatgatgcggtggagataaggagagctgcgatggaggctgct |
3030637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 40 - 158
Target Start/End: Complemental strand, 42553805 - 42553687
Alignment:
| Q |
40 |
aggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgacgttgctgcacttgctcttaaggggaaatcagcctgtcttaattttg |
139 |
Q |
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|||||||||||||||||||||||||| ||||| ||||| ||||||||||| |||||||| ||||| || ||| || |||||||| ||||||||||||| |
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| T |
42553805 |
aggatttggcttggaacatatccaacacctgagatggcagcacgtgcacacgacgttgccgcactggcacttcgcggtaaatcagcttgtcttaattttg |
42553706 |
T |
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| Q |
140 |
ctgactctgcatggcggtt |
158 |
Q |
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|||||||||| |||||||| |
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| T |
42553705 |
ctgactctgcgtggcggtt |
42553687 |
T |
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