View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1677_low_4 (Length: 378)
Name: NF1677_low_4
Description: NF1677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1677_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 10 - 361
Target Start/End: Complemental strand, 39699409 - 39699058
Alignment:
| Q |
10 |
atgaacaaaaataatcaagtgacaggtttagagggaaaataaagagaagaaacaaacctggaacaaaagtgttctgaggacttccattgatgaaaggaac |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39699409 |
atgaacaaaaataatcaagtgacaggtttagagggaaaataaagagaagaaacaaacctggaacaaaagtgttctgaggacttccattgatgaaaggaac |
39699310 |
T |
|
| Q |
110 |
attctccataacacaagcaatggcaaacagggtggaaggtgaaatctcagactcatttctgtccacagcagcaaaaaggttctccatggtgtcattgagt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39699309 |
attctccataacacaagcaatggcaaacagggtggaaggtgaaatctcagactcatttctgtccacagcagcaaaaaggttctccatggtgtcattgagt |
39699210 |
T |
|
| Q |
210 |
cctacaactaagttactgtacctctctgtgttggcagtccagagcacaacaaccctgtcaactttgtttgcttccttaaattccctgaattcatgtcaac |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39699209 |
cctacaactaagttactgtacctctctgtgttggcagtccagagtacaacaaccctgtcaactttgtttgcttccttaaattccctgaattcatgtcaac |
39699110 |
T |
|
| Q |
310 |
ataggaacatatattcagcaaatgttaagctggttaaaagtacaagtatagc |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39699109 |
ataggaacatatattcagcaaatgttaagctggttaaaagtacaagtatagc |
39699058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 64 - 295
Target Start/End: Complemental strand, 38079793 - 38079562
Alignment:
| Q |
64 |
aacctggaacaaaagtgttctgaggacttccattgatgaaaggaacattctccataacacaagcaatggcaaacagggtggaaggtgaaatctcagactc |
163 |
Q |
| |
|
||||||| ||||| ||||| ||||| ||||||||||| ||||||||||| || | ||||||||| | |||| | ||||| |||||||||||||||| || |
|
|
| T |
38079793 |
aacctgggacaaaggtgttttgagggcttccattgataaaaggaacattttcaagaacacaagccaaggcataaagggttgaaggtgaaatctcagcttc |
38079694 |
T |
|
| Q |
164 |
atttctgtccacagcagcaaaaaggttctccatggtgtcattgagtcctacaactaagttactgtacctctctgtgttggcagtccagagcacaacaacc |
263 |
Q |
| |
|
||| ||||||||| ||| ||||| || || |||||||||| ||||| ||||| | ||||| |||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
38079693 |
attcttgtccacagaagccaaaagattttcagtggtgtcatttagtcccacaacaatattactatacctctcagtgttggcagtccagagtacaacaacc |
38079594 |
T |
|
| Q |
264 |
ctgtcaactttgtttgcttccttaaattccct |
295 |
Q |
| |
|
| ||||| ||| | | ||||||||| ||||| |
|
|
| T |
38079593 |
ttatcaaccttggtagtttccttaaactccct |
38079562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University