View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16780_high_12 (Length: 456)
Name: NF16780_high_12
Description: NF16780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16780_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 41537995 - 41537567
Alignment:
| Q |
1 |
atgcttatccaactacactgctagcatgttggctactataaattgcattgctaaactagcattggatgcaaaacaaatcaagtcttaaacagctcaaaga |
100 |
Q |
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| T |
41537995 |
atgcttatccaactacactgctagcatgttggctactataaattgcattgctaaactagcattggatgcaaaacaaatcaagtcttaaacagctcaaaga |
41537896 |
T |
|
| Q |
101 |
acacctttcaaaataaaaaggatgcttcaaacctctgctgctcgaaattctatcaaaaggtgtagagatacatcaaaagctcaaagcaatgtcaatgaga |
200 |
Q |
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| T |
41537895 |
acacctttcaaaataaaaaggatgcttcaaacctctgctgctcgaaattctatcaaaaggtgtagagatacatcaaa--------gcaatgtcaatgaga |
41537804 |
T |
|
| Q |
201 |
cctctaatagaacaccttttgcagaaattaccaatggtacatgctttatctttttgctatatcgtttttgccattctaaattctaatcagtgctgtttaa |
300 |
Q |
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| T |
41537803 |
cctctgatagaacaccttttgcagacattaccaatgctacatgctttatctttttgctatatcgtttttgccattctaaattctaatcagtgctgtttaa |
41537704 |
T |
|
| Q |
301 |
aattactaacttattgtattttacgtttatgtagcaccttccctgtccactagcagtcgccccgttaagaaaagaagtcttggtcatgatggtagactca |
400 |
Q |
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| T |
41537703 |
aattactaacttattgtattttacgtttatgtagcaccttccctgtccactagcagtcgccccgttaagaagagaagtcttggtcatgatggtagactca |
41537604 |
T |
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| Q |
401 |
ctccaggaaagtacacgctgcataatagcgtcctcct |
437 |
Q |
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| T |
41537603 |
ctccaggaaagtacacgctgcataatagcgtcctcct |
41537567 |
T |
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