View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16780_high_15 (Length: 436)
Name: NF16780_high_15
Description: NF16780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16780_high_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 378; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Original strand, 35062124 - 35062537
Alignment:
| Q |
1 |
atgccccttcgaaaacctctaccagcgccaaagtatgaaccttgtctgcatacaggaaaaagaaggtgtcaacctaaaacatgaaaaagcctagaactca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35062124 |
atgccccttcgaaaacctctaccagcgccaaagtatgaaccttgtctgcatacaggaaaaagaaggtgtcaacctaaaacatgaaaaagcctagaactca |
35062223 |
T |
|
| Q |
101 |
aaggctttaatggaaagaaaatcatatttgacgtgtggaattcaatcttcgttgggaatgaggttttcttagatgactataattggatttgataaaataa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35062224 |
aaggctttaatggaaagaaaatcatatttgacgtgtggaattcaatcttcgttgggaatgaggttttcttagatgactataattggatttgataaaataa |
35062323 |
T |
|
| Q |
201 |
aggaaatcagagtagaatgtcattagttaccattgtttggataaaactcattttgttgcatcaaatgcctcttatccctccacaggnnnnnnntaagtat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
35062324 |
aggaaatcagagtagaatgtcattagttaccattgtttggataaaactcattttgttgcatcaaatgcctcttatccctccacaggaaaaaaataagtat |
35062423 |
T |
|
| Q |
301 |
attcataaaataaatatggtttgtaactccatttgaagggcgaaatggaatgagtcaaggagtatgcgatagaatgaatttataatgattacatttagtt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35062424 |
attcataaaataaatatggtttgtaactccatttgaagggcgaaatggaatgagtcaa-----atgcgatagaatgaatttataatgattacatttagtt |
35062518 |
T |
|
| Q |
401 |
aacatctccatggcattat |
419 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
35062519 |
aacatctccatggcattat |
35062537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 4 - 408
Target Start/End: Original strand, 42813127 - 42813522
Alignment:
| Q |
4 |
ccccttcgaaaacctctaccagcgccaaagtatgaaccttgtctgcatacaggaaaaagaaggtgtcaacctaaaacatgaaaaagcctagaactcaaag |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| | |
|
|
| T |
42813127 |
ccccttcgaaaacctctaccagcgccaaagtctgaaccttgtctgcatacaggaaaaagaaggtgtcaacctaaaacatcaaaaagcccagaacttggaa |
42813226 |
T |
|
| Q |
104 |
gctttaatggaaagaaaatcatatttgacgtgtggaattcaatcttcgttgggaatgaggttttcttagatgactataattggatttgataaaataaagg |
203 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| | |
|
|
| T |
42813227 |
gctttaatggaaagaaaatcatatttgacatgtggaattcaatcttcgttgggaatgaggttttcttagacgactatgtttggatttgataaaataaacg |
42813326 |
T |
|
| Q |
204 |
aaatcagagtagaatgtcattagttaccattgtttggataaaactcattttgttgcatcaaatgcctcttatc----cctccacaggnnnnnnntaagta |
299 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||| |||||| |
|
|
| T |
42813327 |
aaatcagagtagaatgttattagttaccattgtttggataaaactcattttgttgcatcaaatgcctcttaccccaacccccacaggaaaaaaataagta |
42813426 |
T |
|
| Q |
300 |
tattcataaaataaatatggtttgtaactccatttgaagggcgaaatggaatgagtcaaggagtatgcgatagaatgaatttataatgattacatttagt |
399 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||| ||||||||||||| | |||| |||||||||||||||||||||||| |
|
|
| T |
42813427 |
tattaataaaataaatatggtttgtaactccatttgatgggcaaaatggaatgagtga-------------agaaggaatttataatgattacatttagt |
42813513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 5 - 355
Target Start/End: Original strand, 43023459 - 43023808
Alignment:
| Q |
5 |
cccttcgaaaacctctaccagcgccaaagtatgaaccttgtctgcatacaggaaaaagaaggtgtcaacctaaaacatgaaaaagcctagaactcaaagg |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| || |||||||| ||| |
|
|
| T |
43023459 |
cccttcgaaaacctctaccagcgccaaagtatgaaccttgtctgcatacaggaaaaag---gtgtcaacataaaacatcaaaaatcccagaactcagagg |
43023555 |
T |
|
| Q |
105 |
ctttaatggaaagaaaatcatatttgacgtgtggaattcaatcttcgttgggaatgaggttttcttagatgactataattggatttgataaaataaagga |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
43023556 |
ctttaatggaaagaaaatcatatttgacgtgtggaattcaatcttcgttaggaatgaggttttcttagacgactatgtttggatttgataaaataaagga |
43023655 |
T |
|
| Q |
205 |
aatcagagtagaatgtcattagttaccattgtttggataaaactcattttgttgcatcaaatgcctcttatc----cctccacaggnnnnnnntaagtat |
300 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| || || |||| |||||| |
|
|
| T |
43023656 |
aatc--agtagaatgttattagttaccattgtttggataaaactcattttgttgcattaaatgcctcttatccccacccccgcaggaaaaaaagaagtat |
43023753 |
T |
|
| Q |
301 |
attcataaaataaatatggtttgtaactccatttgaagggcgaaatggaatgagt |
355 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
43023754 |
attaataaaataaatatggtttgtaactccatttgatgggcaaaatggaatgagt |
43023808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 408
Target Start/End: Original strand, 43023811 - 43023848
Alignment:
| Q |
371 |
agaatgaatttataatgattacatttagttaacatctc |
408 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
43023811 |
agaatgaatttagagtgattacatttagttaacatctc |
43023848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 41564397 - 41564347
Alignment:
| Q |
1 |
atgccccttcgaaaacctctaccagcgccaaagtatgaaccttgtctgcat |
51 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||| ||||||||| |||||| |
|
|
| T |
41564397 |
atgccccttccaaaacctctaccagcaccaaagtctgaaccttgactgcat |
41564347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University