View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16780_high_19 (Length: 408)
Name: NF16780_high_19
Description: NF16780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16780_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 3 - 395
Target Start/End: Complemental strand, 7590500 - 7590108
Alignment:
| Q |
3 |
caccatcaaaccgccgtcaaccaccatcacacagctgctaaccaccaagataacaaccagcatgccgaacagcaagcaccagtaaccgtccccaaccatt |
102 |
Q |
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| T |
7590500 |
caccatcaaaccgccgccaaccaccatcacacagctgctaaccaccaagataacagccagcatgccgaacagcaagcaccagtaaccgtccccaaccatt |
7590401 |
T |
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| Q |
103 |
caatttcacaaaacagaaacggtcaggaattaaatgttagtaatagtgaaggttctatttttaatggtgatgttattagcattagtgaaggataccagga |
202 |
Q |
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| T |
7590400 |
caatttcactaaacataaacggtaaggaattaaatgttagtaatagtgaaggttctatttttaatggtgatgttattagcattagtgaaggatcccagga |
7590301 |
T |
|
| Q |
203 |
gctacatggggattggctgctagtctcaagaagnnnnnnnnctgccaataaccagcaatcaaaccaatcaaagcaagctaataataccaaagctaacaga |
302 |
Q |
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||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
7590300 |
gctacatggtgattggctgctagtctcaagaagaaaaaaaactgccaatagccagcaatcaaaccaatcaaagcaagctaataataccaaagctaataaa |
7590201 |
T |
|
| Q |
303 |
ttttcggtcttcaataacctggcccacctaaccaaacctaaaagcttttctcctaaacctattactattgtcacaacacgtgatcccaaaact |
395 |
Q |
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| T |
7590200 |
ttttcggtcttcaataacctggcccaccaaaccaaacctaaaagcttttctcctaaacctattactgttgtcacaacacgtgatcccaaaact |
7590108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 26711848 - 26711617
Alignment:
| Q |
1 |
accaccatcaaaccgccgtcaaccaccatcacacagctgctaaccaccaagataacaaccagcatgccgaacagcaagcaccagtaaccgtccccaacca |
100 |
Q |
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|||||||||||||||| || |||| ||||||||| || || ||||| ||||| |||| ||||| || || ||||||| ||||| |||||||| ||||| |
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| T |
26711848 |
accaccatcaaaccgctgtgaacctccatcacaccgccgccaaccatcaagaaaacagccagcctgttgaccagcaagacccagtcaccgtccctaacca |
26711749 |
T |
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| Q |
101 |
ttcaatttcacaaaacagaaacggtcaggaattaaatgttagtaatagtgaaggttctatttttaatggtgatgttattagcattagtgaaggataccag |
200 |
Q |
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||||||||||||||||| ||||||||| ||||||||||| | |||||| |||||||| ||||||||||| | |||||||| |||| |||||| |||| |
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| T |
26711748 |
ttcaatttcacaaaacacaaacggtcaagaattaaatgtcattaatagcgaaggttccatttttaatggaggtgttattaccattgatgaaggtacccag |
26711649 |
T |
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| Q |
201 |
gagctacatggggattggctgctagtctcaag |
232 |
Q |
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| T |
26711648 |
gagctacatggggattggctccttgtctcaag |
26711617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 247 - 394
Target Start/End: Complemental strand, 26711335 - 26711188
Alignment:
| Q |
247 |
ccaataaccagcaatcaaaccaatcaaagcaagctaataataccaaagctaacagattttcggtcttcaataacctggcccacctaaccaaacctaaaag |
346 |
Q |
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|||||| ||| || |||||| | ||||||||||| |||||| ||||||||||||||||||| || | |||||| || |||||| ||||||| |||||| |
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| T |
26711335 |
ccaatagccaacagtcaaactactcaaagcaagccaataattccaaagctaacagattttctgtgctgaataacatgacccaccaaaccaaaattaaaag |
26711236 |
T |
|
| Q |
347 |
cttttctcctaaacctattactattgtcacaacacgtgatcccaaaac |
394 |
Q |
| |
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| | |||||| ||||||| || || | ||||||| ||||||||||| |
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| T |
26711235 |
ccatcctcctagacctattccttatgacgcaacacgcgatcccaaaac |
26711188 |
T |
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