View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16780_high_23 (Length: 385)

Name: NF16780_high_23
Description: NF16780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16780_high_23
NF16780_high_23
[»] chr5 (12 HSPs)
chr5 (14-370)||(38986382-38986739)
chr5 (241-366)||(37206043-37206168)
chr5 (241-337)||(38976253-38976349)
chr5 (226-340)||(33908118-33908232)
chr5 (282-367)||(74952-75037)
chr5 (226-286)||(17016524-17016584)
chr5 (221-269)||(19646960-19647008)
chr5 (199-318)||(4975759-4975878)
chr5 (199-266)||(18922222-18922289)
chr5 (220-286)||(39479387-39479453)
chr5 (220-269)||(17320428-17320477)
chr5 (241-269)||(37205280-37205308)
[»] chr1 (16 HSPs)
chr1 (14-367)||(45038951-45039305)
chr1 (199-286)||(50511970-50512057)
chr1 (212-366)||(31489481-31489635)
chr1 (220-364)||(5114871-5115015)
chr1 (199-286)||(699951-700038)
chr1 (235-366)||(32057530-32057661)
chr1 (199-286)||(44922235-44922322)
chr1 (241-324)||(46237603-46237686)
chr1 (226-269)||(35985509-35985552)
chr1 (220-366)||(40601744-40601890)
chr1 (220-366)||(48812550-48812696)
chr1 (220-286)||(1858786-1858852)
chr1 (241-366)||(19406610-19406735)
chr1 (220-286)||(40412529-40412595)
chr1 (220-269)||(12255209-12255258)
chr1 (226-286)||(6501663-6501723)
[»] chr6 (18 HSPs)
chr6 (7-316)||(17869036-17869346)
chr6 (7-227)||(17878819-17879040)
chr6 (241-367)||(20139187-20139313)
chr6 (241-367)||(22193556-22193682)
chr6 (242-366)||(27966762-27966886)
chr6 (200-337)||(31472455-31472592)
chr6 (252-316)||(17879034-17879098)
chr6 (235-269)||(17868443-17868477)
chr6 (235-269)||(17878226-17878260)
chr6 (220-286)||(29034492-29034558)
chr6 (242-366)||(2703019-2703143)
chr6 (241-366)||(31655538-31655663)
chr6 (241-364)||(29641067-29641190)
chr6 (241-364)||(31511246-31511369)
chr6 (243-366)||(34178403-34178526)
chr6 (261-363)||(10233651-10233753)
chr6 (220-269)||(13835982-13836031)
chr6 (220-269)||(27965807-27965856)
[»] chr4 (14 HSPs)
chr4 (7-367)||(51401125-51401475)
chr4 (7-129)||(10797143-10797266)
chr4 (199-337)||(32767585-32767723)
chr4 (200-366)||(44341168-44341334)
chr4 (241-324)||(43286269-43286352)
chr4 (235-366)||(41361232-41361363)
chr4 (220-366)||(56264413-56264559)
chr4 (241-337)||(52464103-52464199)
chr4 (220-286)||(16623506-16623572)
chr4 (255-340)||(3415234-3415319)
chr4 (226-269)||(19474702-19474745)
chr4 (199-337)||(9455302-9455440)
chr4 (199-269)||(44871499-44871569)
chr4 (221-269)||(44341843-44341891)
[»] chr2 (13 HSPs)
chr2 (14-268)||(25459739-25459994)
chr2 (199-339)||(15614121-15614261)
chr2 (220-366)||(31742842-31742988)
chr2 (220-367)||(27495845-27495992)
chr2 (241-337)||(38838052-38838148)
chr2 (220-269)||(27552034-27552083)
chr2 (219-286)||(12017479-12017546)
chr2 (199-286)||(25868914-25869001)
chr2 (199-269)||(26984447-26984517)
chr2 (220-269)||(13311583-13311632)
chr2 (239-280)||(17920847-17920888)
chr2 (245-286)||(34313780-34313821)
chr2 (241-269)||(26555852-26555880)
[»] chr7 (13 HSPs)
chr7 (219-366)||(35709867-35710014)
chr7 (241-366)||(7505211-7505336)
chr7 (220-369)||(37471525-37471674)
chr7 (242-321)||(33604574-33604653)
chr7 (241-316)||(47381487-47381562)
chr7 (199-286)||(33626910-33626997)
chr7 (220-286)||(8781529-8781595)
chr7 (199-269)||(13598134-13598204)
chr7 (252-366)||(31272137-31272251)
chr7 (241-307)||(35710611-35710677)
chr7 (333-366)||(10013398-10013431)
chr7 (241-286)||(15457214-15457259)
chr7 (220-367)||(47761690-47761837)
[»] chr8 (10 HSPs)
chr8 (241-337)||(42739369-42739465)
chr8 (199-339)||(15243774-15243914)
chr8 (220-366)||(6266236-6266382)
chr8 (199-284)||(32018374-32018459)
chr8 (199-286)||(957506-957593)
chr8 (220-366)||(5927043-5927189)
chr8 (220-366)||(24101755-24101901)
chr8 (199-286)||(29940080-29940167)
chr8 (199-269)||(6142966-6143036)
chr8 (241-269)||(40027581-40027609)
[»] chr3 (18 HSPs)
chr3 (220-366)||(7910165-7910311)
chr3 (227-366)||(43735958-43736096)
chr3 (241-366)||(6888731-6888856)
chr3 (241-366)||(42854300-42854425)
chr3 (199-286)||(3995072-3995159)
chr3 (220-269)||(29522805-29522854)
chr3 (227-340)||(33982991-33983104)
chr3 (199-286)||(3974718-3974805)
chr3 (220-366)||(31412140-31412286)
chr3 (220-366)||(41933241-41933387)
chr3 (199-286)||(51885296-51885383)
chr3 (223-269)||(11486272-11486318)
chr3 (220-286)||(32774448-32774514)
chr3 (220-286)||(43088013-43088079)
chr3 (220-286)||(54313352-54313418)
chr3 (199-268)||(1460271-1460340)
chr3 (252-324)||(19975796-19975868)
chr3 (241-269)||(42481043-42481071)
[»] scaffold1449 (1 HSPs)
scaffold1449 (273-366)||(1584-1677)
[»] scaffold0007 (1 HSPs)
scaffold0007 (219-286)||(231672-231739)
[»] scaffold0495 (1 HSPs)
scaffold0495 (261-363)||(10375-10477)
[»] scaffold0019 (1 HSPs)
scaffold0019 (240-286)||(103133-103179)
[»] scaffold0661 (1 HSPs)
scaffold0661 (240-269)||(1588-1617)


Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 14 - 370
Target Start/End: Original strand, 38986382 - 38986739
Alignment:
Q  14 tactgcatatgtttaaaaaatccattaagtctttcaatttctacacttgatcgaatgcacggaatggtttcaactcaaaatgaaaaatatagacattact 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38986382 tactgcatatgtttaaaaaatccattaagtctttcaatttctacacttgatcgaatgcacggaatggtttcaactcaaaatgaaaaatatagacattact 38986481  T
Q  114 taaagttggttggaagcttattccttggtctgcacttaatccttcattcactccacaccaaaactgaaccaacttata-nnnnnnngcgggctgccctta 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||    
T  38986482 taaagttggttggaagcttattccttggtctgcacttaatccttcattcactccacaccaaaactgaaccaacttatattttttttgcgggctgccctta 38986581  T
Q  213 gcccgagcgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgagcccaagccctaagt 312  Q
    ||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||    
T  38986582 gcccgagtgggccagcccaaatggattgcgggctttttcgggccgggctaaaaagccctagaaaaattcgggctgaaatttttgagcccaagccctaagt 38986681  T
Q  313 tttactcgggctaacggtccggcccattcgggctagcccgttttgacagctctaactg 370  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38986682 tttactcaggctaacggtccggcccattcgggctagcccgttttgacagctctaactg 38986739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 241 - 366
Target Start/End: Original strand, 37206043 - 37206168
Alignment:
Q  241 cgggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgagcccaagccctaagttttactcgggctaacggtccggcccatt 340  Q
    |||||||||  |||||| ||||||||||| || ||||| | ||| || |||||||  |||||||||||| |||||| |||||||  ||| |||||| ||     
T  37206043 cgggcttttacgggccgagctaaaaagccctaaaaaaaatcgggttgcaatttttaggcccaagccctacgttttattcgggctttcgggccggcctata 37206142  T
Q  341 cgggctagcccgttttgacagctcta 366  Q
    |||||  |||||||||||||||||||    
T  37206143 cgggccggcccgttttgacagctcta 37206168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 241 - 337
Target Start/End: Original strand, 38976253 - 38976349
Alignment:
Q  241 cgggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgagcccaagccctaagttttactcgggctaacggtccggccc 337  Q
    |||||||||| |||||||||||||||||||| | |||||| |||||| |||| ||  |||||||||||| |||||| |||||||  ||| |||||||    
T  38976253 cgggctttttcgggccgggctaaaaagcctttggaaaattcgggctgcaattattaggcccaagccctacgttttattcgggctttcgggccggccc 38976349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 340
Target Start/End: Original strand, 33908118 - 33908232
Alignment:
Q  226 agcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgagcccaagccctaagttttactcgggcta 325  Q
    ||||| || ||||| |||||||||  |||||||||||||||||| |||||||||| |||||  |||||||  ||||| |||||  |||||| |||||||     
T  33908118 agcccgaacgggttacgggcttttacgggccgggctaaaaagccctagaaaaattcgggctccaatttttcggcccaggccctgtgttttattcgggctt 33908217  T
Q  326 acggtccggcccatt 340  Q
     ||| ||||||||||    
T  33908218 tcggaccggcccatt 33908232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 282 - 367
Target Start/End: Complemental strand, 75037 - 74952
Alignment:
Q  282 gggctggaatttttgagcccaagccctaagttttactcgggctaacggtccggcccattcgggctagcccgttttgacagctctaa 367  Q
    |||||| |||||||  |||||||||||| |||||| |||||||  ||| ||| |||||  ||||||||||||||||||||||||||    
T  75037 gggctgcaatttttaggcccaagccctacgttttattcgggctttcggaccgacccatatgggctagcccgttttgacagctctaa 74952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 226 - 286
Target Start/End: Complemental strand, 17016584 - 17016524
Alignment:
Q  226 agcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggct 286  Q
    |||||||| |||| |||||||||||||||||||||||||||||| ||  |||||| |||||    
T  17016584 agcccaaacgggtagcgggctttttagggccgggctaaaaagccctattaaaattcgggct 17016524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 269
Target Start/End: Original strand, 19646960 - 19647008
Alignment:
Q  221 gggccagcccaaatgggttgcgggctttttagggccgggctaaaaagcc 269  Q
    |||| ||||| || |||| ||||||||||||||||||||||||||||||    
T  19646960 gggctagccctaacgggtagcgggctttttagggccgggctaaaaagcc 19647008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 199 - 318
Target Start/End: Original strand, 4975759 - 4975878
Alignment:
Q  199 gcgggctgcccttagcccgagcgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgag 298  Q
    ||||||||||| | ||||||  |||| ||||| || ||  | |||||||||| || ||||||||||||| |||||||||||| | |||  |||| ||  |    
T  4975759 gcgggctgcccgtggcccgaatgggctagccctaacggactccgggctttttcggaccgggctaaaaagtcttagaaaaattcgagctacaattattagg 4975858  T
Q  299 cccaagccctaagttttact 318  Q
    ||||| ||||| ||||||||    
T  4975859 cccaaaccctacgttttact 4975878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 199 - 266
Target Start/End: Complemental strand, 18922289 - 18922222
Alignment:
Q  199 gcgggctgcccttagcccgagcgggccagcccaaatgggttgcgggctttttagggccgggctaaaaa 266  Q
    ||||||| ||||  |||||  ||||| ||||| || |||| |||||||||||||||||||||||||||    
T  18922289 gcgggctaccctcggcccgttcgggctagccctaacgggtagcgggctttttagggccgggctaaaaa 18922222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 286
Target Start/End: Complemental strand, 39479453 - 39479387
Alignment:
Q  220 cgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggct 286  Q
    ||||| ||||| || ||||  ||||||||||||||||||||||||||||| ||  |||||| |||||    
T  39479453 cgggctagccctaacgggtaccgggctttttagggccgggctaaaaagccatattaaaattcgggct 39479387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 269
Target Start/End: Complemental strand, 17320477 - 17320428
Alignment:
Q  220 cgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagcc 269  Q
    ||||| ||||| || ||||  |||||||||||||||||||||||||||||    
T  17320477 cgggctagccctaacgggtaccgggctttttagggccgggctaaaaagcc 17320428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 37205280 - 37205308
Alignment:
Q  241 cgggctttttagggccgggctaaaaagcc 269  Q
    |||||||||||||||||||||||||||||    
T  37205280 cgggctttttagggccgggctaaaaagcc 37205308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 14 - 367
Target Start/End: Complemental strand, 45039305 - 45038951
Alignment:
Q  14 tactgcatatgtttaaaaaatccattaagtctttcaatttctacacttgatcgaatgcacggaatggtttcaactcaaaatgaaaaatatagacattact 113  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||||    
T  45039305 tactgcagatgtttaaaaaatccattaagtctttcaatttctacacttgatcgaatacacataatggtttcaactcagaatgaaaaatatagacattact 45039206  T
Q  114 taaagttggttggaagcttattccttggtctgcacttaatccttcattcactccacaccaaaactgaaccaacttata-nnnnnnngcgggctgccctta 212  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||        ||||||||||||||    
T  45039205 taaagttggttggaagcttattccttggtctgcacttgatccttcattcactccacaccaaaactgaaccaacttatattttttttgcgggctgccctta 45039106  T
Q  213 gcccgagcgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgagcccaagccctaagt 312  Q
    ||||||||||||||||||||| |||||||||||||||| ||| ||||||||||| || | |||||||| ||||| ||||||||| |||||| ||||||||    
T  45039105 gcccgagcgggccagcccaaacgggttgcgggctttttcgggtcgggctaaaaaaccctggaaaaattcgggctagaatttttgtgcccaaaccctaagt 45039006  T
Q  313 tttactcgggctaacggtccggcccattcgggctagcccgttttgacagctctaa 367  Q
    ||||||||||||||||| ||| || |||||| |||||||||||||||||||||||    
T  45039005 tttactcgggctaacgggccgccctattcggactagcccgttttgacagctctaa 45038951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 286
Target Start/End: Original strand, 50511970 - 50512057
Alignment:
Q  199 gcgggctgcccttagcccgagcgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggct 286  Q
    ||||||| ||||| |||||  ||||| ||||| || |||| |||||||||||||||||||||||||||||| ||  |||||| |||||    
T  50511970 gcgggctacccttggcccgttcgggctagccctaacgggtagcgggctttttagggccgggctaaaaagccctattaaaattcgggct 50512057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 212 - 366
Target Start/End: Original strand, 31489481 - 31489635
Alignment:
Q  212 agcccgagcgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgagcccaagccctaag 311  Q
    ||||||| ||||| ||||| || ||||  ||||| |||| |||||||| |||||||||    |   ||| |||||| |||||||  |||||||||||| |    
T  31489481 agcccgaacgggctagccctaacgggtaacgggccttttcgggccgggttaaaaagcccggaatttattcgggctgtaatttttaggcccaagccctatg 31489580  T
Q  312 ttttactcgggctaacggtccggcccattcgggctagcccgttttgacagctcta 366  Q
    ||||| |||||||  ||| | ||||||||||| |  |||||||||||||||||||    
T  31489581 ttttattcgggctttcgggctggcccattcggcccggcccgttttgacagctcta 31489635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 364
Target Start/End: Complemental strand, 5115015 - 5114871
Alignment:
Q  220 cgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgagcccaagccctaagttttactc 319  Q
    ||||| ||||| || ||||  ||||||||| ||||||||||||||||||| ||  |||||| |||||  |  ||||  ||||||||||| |  |||| ||    
T  5115015 cgggctagccctaacgggtaccgggcttttaagggccgggctaaaaagccctattaaaattcgggcttaatattttaggcccaagccct-atatttattc 5114917  T
Q  320 gggct-aacggtccggcccattcgggctagcccgttttgacagctc 364  Q
    ||||| ||||| ||||||||| |||||  |||||||||||||||||    
T  5114916 gggctaaacgggccggcccatacgggccggcccgttttgacagctc 5114871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 199 - 286
Target Start/End: Complemental strand, 700038 - 699951
Alignment:
Q  199 gcgggctgcccttagcccgagcgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggct 286  Q
    ||||||| ||||  |||||  ||||| ||||| || |||| ||||||||||||||| |||||||||||||| ||  ||||||||||||    
T  700038 gcgggctaccctcggcccgttcgggctagccctaacgggtagcgggctttttagggtcgggctaaaaagccctattaaaatttgggct 699951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 235 - 366
Target Start/End: Complemental strand, 32057661 - 32057530
Alignment:
Q  235 gggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgagcccaagccctaagttttactcgggctaacggtccgg 334  Q
    ||||| |||||||||  || ||||||||||||||| |||||||||| |||||  |||||||  ||||| |||||  |||||| ||||| |  ||| ||||    
T  32057661 gggttacgggcttttacggaccgggctaaaaagccctagaaaaattcgggctccaatttttcggcccaggccctgcgttttattcgggatttcgggccgg 32057562  T
Q  335 cccattcgggctagcccgttttgacagctcta 366  Q
    ||||| ||| |   ||| ||||||||||||||    
T  32057561 cccatacggcccgccccattttgacagctcta 32057530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 199 - 286
Target Start/End: Complemental strand, 44922322 - 44922235
Alignment:
Q  199 gcgggctgcccttagcccgagcgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggct 286  Q
    ||||||| ||||  |||||  ||||| ||||| || |||| |||||||||||||||||||||||||||||| ||  |||||| |||||    
T  44922322 gcgggctaccctcggcccgttcgggctagccctaacgggtagcgggctttttagggccgggctaaaaagccctattaaaattcgggct 44922235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 241 - 324
Target Start/End: Original strand, 46237603 - 46237686
Alignment:
Q  241 cgggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgagcccaagccctaagttttactcgggct 324  Q
    |||||||||| |||||| ||||||||||| | |||||||| |||||| |||| ||  ||||||||||||  ||||| |||||||    
T  46237603 cgggctttttcgggccgagctaaaaagccctggaaaaattcgggctgcaattattaggcccaagccctatattttattcgggct 46237686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 226 - 269
Target Start/End: Original strand, 35985509 - 35985552
Alignment:
Q  226 agcccaaatgggttgcgggctttttagggccgggctaaaaagcc 269  Q
    ||||| |||||||  |||||||||||||||||||||||||||||    
T  35985509 agccctaatgggtaccgggctttttagggccgggctaaaaagcc 35985552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 220 - 366
Target Start/End: Original strand, 40601744 - 40601890
Alignment:
Q  220 cgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgagcccaagccctaagttttactc 319  Q
    ||||| ||||| |||||||  ||||||||| ||||||||||||||||||  ||  |||||| |||||  |  ||||  |||||| |||| |  |||| ||    
T  40601744 cgggctagccctaatgggtaccgggcttttaagggccgggctaaaaagctctattaaaattcgggctcaatattttaggcccaaaccct-atatttattc 40601842  T
Q  320 gggct-aacggtccggcccattcgggctagcccgttttgacagctcta 366  Q
    ||| | ||||| ||||||||| |||||  |||||||||||||||||||    
T  40601843 gggttaaacgggccggcccatacgggccggcccgttttgacagctcta 40601890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 220 - 366
Target Start/End: Original strand, 48812550 - 48812696
Alignment:
Q  220 cgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgagcccaagccctaagttttactc 319  Q
    ||||| ||||| || ||||  ||||||||| |||| |||||||||||||| ||  |||||| |||||  |  ||||  ||||||||||| |  |||| ||    
T  48812550 cgggctagccctaacgggtaccgggcttttaagggtcgggctaaaaagccctattaaaattcgggctcaatattttaggcccaagccct-atatttattc 48812648  T
Q  320 gggct-aacggtccggcccattcgggctagcccgttttgacagctcta 366  Q
    ||||| |||||  |||||||| |||||  |||||||||||||||||||    
T  48812649 gggctaaacgggacggcccatacgggccggcccgttttgacagctcta 48812696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 286
Target Start/End: Original strand, 1858786 - 1858852
Alignment:
Q  220 cgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggct 286  Q
    ||||||||||| || ||||  ||||||||| ||||||||||||||||||| ||  |||||| |||||    
T  1858786 cgggccagccctaacgggtaccgggcttttaagggccgggctaaaaagccctattaaaattcgggct 1858852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 366
Target Start/End: Complemental strand, 19406735 - 19406610
Alignment:
Q  241 cgggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgagcccaagccctaagttttactcgggct-aacggtccggcccat 339  Q
    ||||||||| ||||||||||||||||||| ||  |||||| |||||  |  ||||  ||||||||||| |  |||| ||||||| ||||| |||||||||    
T  19406735 cgggcttttaagggccgggctaaaaagccctattaaaattcgggctcaatattttaggcccaagccct-atatttattcgggctaaacgggccggcccat 19406637  T
Q  340 tcgggctagcccgttttgacagctcta 366  Q
     |||||  |||| |||||||| |||||    
T  19406636 acgggccggcccattttgacaactcta 19406610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 286
Target Start/End: Original strand, 40412529 - 40412595
Alignment:
Q  220 cgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggct 286  Q
    ||||| ||||| || |||| |||||||||||||||||||| ||||||||| ||  |||||| |||||    
T  40412529 cgggctagccctaacgggtagcgggctttttagggccgggttaaaaagccctattaaaattcgggct 40412595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 269
Target Start/End: Original strand, 12255209 - 12255258
Alignment:
Q  220 cgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagcc 269  Q
    ||||| ||||| |||||||  ||||||||||||||||||| |||||||||    
T  12255209 cgggctagccctaatgggtaccgggctttttagggccgggttaaaaagcc 12255258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 286
Target Start/End: Complemental strand, 6501723 - 6501663
Alignment:
Q  226 agcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggct 286  Q
    |||||||| ||| | |||||||||| |||||||||||||||||  |  |||||||||||||    
T  6501723 agcccaaacgggcttcgggctttttcgggccgggctaaaaagctctgaaaaaatttgggct 6501663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 7 - 316
Target Start/End: Original strand, 17869036 - 17869346
Alignment:
Q  7 tagataatactgcatatgtttaaaaaatccattaagtctttcaatttctacacttgatcgaatgcacggaatggtttcaactcaaaatgaaaaatataga 106  Q
    |||||| ||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||    
T  17869036 tagatattactgcagatgcttaaaaaacccattaagtctttcaatttctacacttgatcgaatacacggaatagtttcaactcataatgaaaaatataga 17869135  T
Q  107 cattacttaaagttggttggaagcttattccttggtctgcacttaatccttcattcactccacaccaaaactgaaccaacttata-nnnnnnngcgggct 205  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||        |||||||    
T  17869136 cattacttaaagttggttggaagcttattccttggtctgcacttgatccttcattcactctacaccaaaactgaaccaacttatattttttttgcgggct 17869235  T
Q  206 gcccttagcccgagcgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgagcccaagc 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |  ||||||| |||||||||||||| |||||||||    
T  17869236 gcccttagcccgagcgggccagcccaaatgggttgcgggctttttcgggccgggctaaaaaaccctgaaaaaattcgggctggaattttttagcccaagc 17869335  T
Q  306 cctaagtttta 316  Q
    |||||||||||    
T  17869336 cctaagtttta 17869346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 17878819 - 17879040
Alignment:
Q  7 tagataatactgcatatgtttaaaaaatccattaagtctttcaatttctacacttgatcgaatgcacggaatggtttcaactcaaaatgaaaaatataga 106  Q
    |||||| ||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||    
T  17878819 tagatattactgcagatgcttaaaaaacccattaagtctttcaatttctacacttgatcgaatacacggaatagtttcaactcagaatgaaaaatataga 17878918  T
Q  107 cattacttaaagttggttggaagcttattccttggtctgcacttaatccttcattcactccacaccaaaactgaaccaacttata-nnnnnnngcgggct 205  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||        |||||||    
T  17878919 cattacttaaagttggttggaagcttattccttggtctgcacttgatccttcattcactctacaccaaaactgaaccaacttatattttttttgcgggct 17879018  T
Q  206 gcccttagcccgagcgggccag 227  Q
    ||||||||||||||||||||||    
T  17879019 gcccttagcccgagcgggccag 17879040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 241 - 367
Target Start/End: Complemental strand, 20139313 - 20139187
Alignment:
Q  241 cgggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgagcccaagccctaagttttactcgggctaacggtccggcccatt 340  Q
    |||||||||| |||||||||||||||||| | |||||||| |||||| |||| ||  |||||||||||| |||||| |||||||  ||| |||||||||     
T  20139313 cgggctttttcgggccgggctaaaaagccctggaaaaattcgggctgcaattattaggcccaagccctacgttttattcgggctttcgggccggcccata 20139214  T
Q  341 cgggctagcccgttttgacagctctaa 367  Q
    |||||  ||||||||||||||||||||    
T  20139213 cgggcgggcccgttttgacagctctaa 20139187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 241 - 367
Target Start/End: Original strand, 22193556 - 22193682
Alignment:
Q  241 cgggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgagcccaagccctaagttttactcgggctaacggtccggcccatt 340  Q
    |||||||||| |||||||||||||||||| | |||||||| |||||| |||| ||  |||||||||||| |||||| |||||||  ||| |||||||||     
T  22193556 cgggctttttcgggccgggctaaaaagccctggaaaaattcgggctgcaattattaggcccaagccctacgttttattcgggctttcgggccggcccata 22193655  T
Q  341 cgggctagcccgttttgacagctctaa 367  Q
    |||||  ||||||||||||||||||||    
T  22193656 cgggcgggcccgttttgacagctctaa 22193682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 242 - 366
Target Start/End: Original strand, 27966762 - 27966886
Alignment:
Q  242 gggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgagcccaagccctaagttttactcgggctaacggtccggcccattc 341  Q
    ||||||||  |||||||||||||||||| | ||||||||||||||| |||| ||  ||||||||||||  |||||||||||||  ||| ||||||||  |    
T  27966762 gggcttttatgggccgggctaaaaagccctggaaaaatttgggctgcaattattaggcccaagccctacattttactcgggctttcgggccggcccacac 27966861  T
Q  342 gggctagcccgttttgacagctcta 366  Q
    || |   ||||||||||||||||||    
T  27966862 ggtccgacccgttttgacagctcta 27966886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 200 - 337
Target Start/End: Original strand, 31472455 - 31472592
Alignment:
Q  200 cgggctgcccttagcccgagcgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgagc 299  Q
    |||||||||| | |||||| ||||| ||||  || ||| | | |||||||| ||||| |||||||||||| |||||||||| |||||| |||| ||  ||    
T  31472455 cgggctgcccgtggcccgaacgggctagccataacgggctcctggctttttcgggcctggctaaaaagccctagaaaaattcgggctgcaattattaggc 31472554  T
Q  300 ccaagccctaagttttactcgggctaacggtccggccc 337  Q
    |||||||||| |||||| |||||||  ||| |||||||    
T  31472555 ccaagccctacgttttattcgggctttcgggccggccc 31472592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 252 - 316
Target Start/End: Original strand, 17879034 - 17879098
Alignment:
Q  252 gggccgggctaaaaagccttagaaaaatttgggctggaatttttgagcccaagccctaagtttta 316  Q
    ||||| |||||||||||| |  ||||||| |||||||||||||| ||||||||||||||||||||    
T  17879034 gggccaggctaaaaagccctgaaaaaattcgggctggaattttttagcccaagccctaagtttta 17879098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 269
Target Start/End: Original strand, 17868443 - 17868477
Alignment:
Q  235 gggttgcgggctttttagggccgggctaaaaagcc 269  Q
    |||||||||||||||||||||||||||||||||||    
T  17868443 gggttgcgggctttttagggccgggctaaaaagcc 17868477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 269
Target Start/End: Original strand, 17878226 - 17878260
Alignment:
Q  235 gggttgcgggctttttagggccgggctaaaaagcc 269  Q
    |||||||||||||||||||||||||||||||||||    
T  17878226 gggttgcgggctttttagggccgggctaaaaagcc 17878260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 286
Target Start/End: Original strand, 29034492 - 29034558
Alignment:
Q  220 cgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggct 286  Q
    ||||| ||||| |||||||  ||||||||||||||||||||||||||||| ||  |||||| |||||    
T  29034492 cgggctagccctaatgggtaccgggctttttagggccgggctaaaaagccctattaaaattcgggct 29034558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 366
Target Start/End: Original strand, 2703019 - 2703143
Alignment:
Q  242 gggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgagcccaagccctaagttttactcgggct-aacggtccggcccatt 340  Q
    |||||||| ||||||||||||||||||| ||  |||||| |||||  |  ||||  ||||||||||| |  |||| ||||||| || || |||||||||     
T  2703019 gggcttttaagggccgggctaaaaagccctattaaaattcgggctcaatattttaggcccaagccct-atatttattcgggctaaatgggccggcccata 2703117  T
Q  341 cgggctagcccgttttgacagctcta 366  Q
    |||||  |||||||||||||||||||    
T  2703118 cgggccggcccgttttgacagctcta 2703143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 241 - 366
Target Start/End: Original strand, 31655538 - 31655663
Alignment:
Q  241 cgggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgagcccaagccctaagttttactcgggctaacggtccggcccatt 340  Q
    |||||||||| || |||||||||||||||    |   ||| |||||| |||||||  |||||| ||||| |||||| |||||||  ||| | ||||||||    
T  31655538 cgggctttttcggaccgggctaaaaagcccggaatttattcgggctgtaatttttaggcccaaaccctatgttttattcgggctttcgggctggcccatt 31655637  T
Q  341 cgggctagcccgttttgacagctcta 366  Q
    ||| |  |||||||||||||||||||    
T  31655638 cggcccggcccgttttgacagctcta 31655663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 364
Target Start/End: Original strand, 29641067 - 29641190
Alignment:
Q  241 cgggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgagcccaagccctaagttttactcgggct-aacggtccggcccat 339  Q
    ||||||||| ||||||||||||||||||| ||  |||||| |||||  |  ||||  ||||||||||| |  |||| ||||||| |||||  ||||||||    
T  29641067 cgggcttttaagggccgggctaaaaagccctattaaaattcgggctcaatattttaggcccaagccct-atatttattcgggctaaacgggtcggcccat 29641165  T
Q  340 tcgggctagcccgttttgacagctc 364  Q
     |||||  |||||||||||||||||    
T  29641166 acgggccggcccgttttgacagctc 29641190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 364
Target Start/End: Original strand, 31511246 - 31511369
Alignment:
Q  241 cgggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgagcccaagccctaagttttactcgggct-aacggtccggcccat 339  Q
    ||||||||| ||||||||||||||||||| ||  |||||| |||||  |  ||||  ||||||||||| |  |||| ||||||| |||||  ||||||||    
T  31511246 cgggcttttaagggccgggctaaaaagccctattaaaattcgggctcaatattttaggcccaagccct-atatttattcgggctaaacgggtcggcccat 31511344  T
Q  340 tcgggctagcccgttttgacagctc 364  Q
     |||||  |||||||||||||||||    
T  31511345 acgggccggcccgttttgacagctc 31511369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 366
Target Start/End: Complemental strand, 34178526 - 34178403
Alignment:
Q  243 ggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgagcccaagccctaagttttactcgggct-aacggtccggcccattc 341  Q
    ||||||| ||||||||||||||||||| ||  ||||||||||||  |  ||||  ||||||||||| |  |||| ||||||| ||||| ||||||||| |    
T  34178526 ggcttttaagggccgggctaaaaagccctattaaaatttgggctcaatattttaggcccaagccct-atatttattcgggctaaacgggccggcccatac 34178428  T
Q  342 gggctagcccgttttgacagctcta 366  Q
    || |   ||||||||||||||||||    
T  34178427 ggcccgacccgttttgacagctcta 34178403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 363
Target Start/End: Original strand, 10233651 - 10233753
Alignment:
Q  261 taaaaagccttagaaaaatttgggctggaatttttgagcccaagccctaagttttactcgggctaacggtccggcccattcgggctagcccgttttgaca 360  Q
    |||||||  ||||||||||||  |||  ||||||| ||||||||||||| |||||| ||| |||  | | ||||| ||| | || |||||||||||||||    
T  10233651 taaaaagttttagaaaaatttaagcttcaatttttaagcccaagccctatgttttattcgagctttcagaccggctcatacaggttagcccgttttgaca 10233750  T
Q  361 gct 363  Q
    |||    
T  10233751 gct 10233753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 269
Target Start/End: Complemental strand, 13836031 - 13835982
Alignment:
Q  220 cgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagcc 269  Q
    ||||| ||||| || ||||  |||||||||||||||||||||||||||||    
T  13836031 cgggctagccctaacgggtatcgggctttttagggccgggctaaaaagcc 13835982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 269
Target Start/End: Original strand, 27965807 - 27965856
Alignment:
Q  220 cgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagcc 269  Q
    ||||||||||| || |||  ||||||||||| ||||||||||||||||||    
T  27965807 cgggccagcccgaacgggcagcgggcttttttgggccgggctaaaaagcc 27965856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 7 - 367
Target Start/End: Original strand, 51401125 - 51401475
Alignment:
Q  7 tagataatactgcatatgtttaaaaaatccattaagtctttcaatttctacacttgatcgaatgcacggaatggtttcaactcaaaatgaaaaatataga 106  Q
    |||||| ||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  51401125 tagatattactgcagatgcttaaaaaacccattaagtctttcaatttctacacttgatcgaatacacggaatggtttcaactcagaatgaaaaatataga 51401224  T
Q  107 cattacttaaagttggttggaagcttattccttggtctgcacttaatccttcattcactccacaccaaaactgaaccaactta----tannnnnnngcgg 202  Q
    ||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    |        ||||    
T  51401225 cattacttaaaattggttggaagcttattccttgctctgcacttgatccttcattcactccacaccaaaactgaaccaacttatttttttttttttgcgg 51401324  T
Q  203 gctgcccttagcccgagcgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgagccca 302  Q
    ||||||||||||||||||              |||||||||| ||||| |||||||||||||||||  | |||||||| |||||||||||||||||||||    
T  51401325 gctgcccttagcccgagc--------------gggttgcgggttttttcgggccgggctaaaaagctctggaaaaattcgggctggaatttttgagccca 51401410  T
Q  303 agccctaagttttactcgggctaacggtccggcccattcgggctagcccgttttgacagctctaa 367  Q
    | ||||||||||||||||||||||||| ||||||||||||  ||||||| |||||||||||||||    
T  51401411 aaccctaagttttactcgggctaacgggccggcccattcgaactagcccattttgacagctctaa 51401475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 7 - 129
Target Start/End: Original strand, 10797143 - 10797266
Alignment:
Q  7 tagataatactgcatatgtttaaaaaatcc-attaagtctttcaatttctacacttgatcgaatgcacggaatggtttcaactcaaaatgaaaaatatag 105  Q
    |||||| ||||||| ||| |||||||| || ||||||||||||||||||||||||||||| ||  |||||||||||||||||||| ||||||||||||||    
T  10797143 tagatattactgcagatgcttaaaaaaacccattaagtctttcaatttctacacttgatcaaacacacggaatggtttcaactcagaatgaaaaatatag 10797242  T
Q  106 acattacttaaagttggttggaag 129  Q
    ||||||||||||||||||||||||    
T  10797243 acattacttaaagttggttggaag 10797266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 199 - 337
Target Start/End: Complemental strand, 32767723 - 32767585
Alignment:
Q  199 gcgggctgcccttagcccgagcgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgag 298  Q
    ||||||||||| | |||||| ||||| ||||  || ||||| |||||||||| |||||||||||||||||| | |||||||| |||||| |||| ||  |    
T  32767723 gcgggctgcccgtggcccgaacgggctagccttaacgggttccgggctttttcgggccgggctaaaaagccctggaaaaattcgggctgcaattattagg 32767624  T
Q  299 cccaagccctaagttttactcgggctaacggtccggccc 337  Q
    |||||||||||  ||||| |||||||  ||| |||||||    
T  32767623 cccaagccctatattttattcgggctttcgggccggccc 32767585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 200 - 366
Target Start/End: Complemental strand, 44341334 - 44341168
Alignment:
Q  200 cgggctgcccttagcccgagcgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgagc 299  Q
    ||||||||||||||||| | ||||| ||||| || ||||| |||||||||  |||||||||||||||||| | ||| |||  || ||| |||| ||  ||    
T  44341334 cgggctgcccttagcccaaacgggctagcccgaaagggttacgggcttttacgggccgggctaaaaagccctggaagaatccggactgcaattattcggc 44341235  T
Q  300 ccaagccctaagttttactcgggctaacggtccggcccattcgggctagcccgttttgacagctcta 366  Q
    ||||||||||  ||||| |||||||  ||| ||||||| |  || |  |||||||||||||||||||    
T  44341234 ccaagccctacattttattcgggctttcggaccggcccgtatggcccggcccgttttgacagctcta 44341168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 241 - 324
Target Start/End: Original strand, 43286269 - 43286352
Alignment:
Q  241 cgggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgagcccaagccctaagttttactcgggct 324  Q
    |||||||||| |||||||||||||||||| | |||||||| |||||| |||| ||  |||||||||||| |||||| |||||||    
T  43286269 cgggctttttcgggccgggctaaaaagccctggaaaaattcgggctgcaattattaggcccaagccctacgttttattcgggct 43286352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 366
Target Start/End: Complemental strand, 41361363 - 41361232
Alignment:
Q  235 gggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgagcccaagccctaagttttactcgggctaacggtccgg 334  Q
    |||||||||| ||||| |||  ||||||||||||| |   |||||  |||||| |||||||  ||||||||| |  |||||| |||||||  ||| ||||    
T  41361363 gggttgcgggattttttgggttgggctaaaaagccctgctaaaatacgggctgcaatttttaggcccaagccatgcgttttattcgggctttcgggccgg 41361264  T
Q  335 cccattcgggctagcccgttttgacagctcta 366  Q
    |||||   ||||||||||||||||||||||||    
T  41361263 cccatataggctagcccgttttgacagctcta 41361232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 366
Target Start/End: Original strand, 56264413 - 56264559
Alignment:
Q  220 cgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgagcccaagccctaagttttactc 319  Q
    ||||| ||||| || ||||  ||||||||| ||||||||||||||||||| ||  |||||| |||||  |  ||||  ||||||||||| |  |||| ||    
T  56264413 cgggctagccctaacgggtaccgggcttttaagggccgggctaaaaagccctattaaaattcgggctcaatattttaggcccaagccct-atatttattc 56264511  T
Q  320 gggct-aacggtccggcccattcgggctagcccgttttgacagctcta 366  Q
    ||||| ||||| ||||||||| |||||  |||||||||||||||||||    
T  56264512 gggctaaacgggccggcccatacgggccggcccgttttgacagctcta 56264559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 241 - 337
Target Start/End: Original strand, 52464103 - 52464199
Alignment:
Q  241 cgggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgagcccaagccctaagttttactcgggctaacggtccggccc 337  Q
    |||||||||| | |||||||||||||||  | |||||||| |||||| |||| ||  |||||||||||| |||||| |||||||  ||| |||||||    
T  52464103 cgggctttttcgagccgggctaaaaagctcttgaaaaattcgggctgtaattattaggcccaagccctacgttttattcgggctttcgggccggccc 52464199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 286
Target Start/End: Complemental strand, 16623572 - 16623506
Alignment:
Q  220 cgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggct 286  Q
    ||||| ||||| || |||| |||||||||||||||||||||||||||||| ||  |||||| |||||    
T  16623572 cgggctagccctaacgggtagcgggctttttagggccgggctaaaaagccctattaaaattcgggct 16623506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 255 - 340
Target Start/End: Original strand, 3415234 - 3415319
Alignment:
Q  255 ccgggctaaaaagccttagaaaaatttgggctggaatttttgagcccaagccctaagttttactcgggctaacggtccggcccatt 340  Q
    ||||||||||||||| | |||||||| |||||  |||| ||  |||||||||||| |||||| |||||||  ||| ||||||||||    
T  3415234 ccgggctaaaaagccctggaaaaattcgggctccaattattaggcccaagccctacgttttattcgggctttcgggccggcccatt 3415319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 226 - 269
Target Start/End: Original strand, 19474702 - 19474745
Alignment:
Q  226 agcccaaatgggttgcgggctttttagggccgggctaaaaagcc 269  Q
    ||||| |||||||  |||||||||||||||||||||||||||||    
T  19474702 agccctaatgggtaccgggctttttagggccgggctaaaaagcc 19474745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 337
Target Start/End: Original strand, 9455302 - 9455440
Alignment:
Q  199 gcgggctgcccttagcccgagcgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgag 298  Q
    ||||||||||| |||||||| | ||||||||| || ||| | ||| |||||| |||||  ||||||||||| |  ||||||| |||||| |||| || ||    
T  9455302 gcgggctgcccgtagcccgaactggccagccctaacgggctacggcctttttcgggcccagctaaaaagccctgaaaaaattcgggctgcaattattcag 9455401  T
Q  299 cccaagccctaagttttactcgggctaacggtccggccc 337  Q
     |||  |||||  ||||| |||||||  ||| |||||||    
T  9455402 tccagtccctacattttattcgggctttcggaccggccc 9455440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 269
Target Start/End: Original strand, 44871499 - 44871569
Alignment:
Q  199 gcgggctgcccttagcccgagcgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagcc 269  Q
    ||||||| ||||  |||||  ||||| ||||| || |||| || |||||||||||||||||||||||||||    
T  44871499 gcgggctaccctcggcccgttcgggctagccctaacgggtagcaggctttttagggccgggctaaaaagcc 44871569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 269
Target Start/End: Complemental strand, 44341891 - 44341843
Alignment:
Q  221 gggccagcccaaatgggttgcgggctttttagggccgggctaaaaagcc 269  Q
    ||||| ||||||| ||| ||||||||||||||| ||||||| |||||||    
T  44341891 gggccggcccaaacgggctgcgggctttttaggaccgggctgaaaagcc 44341843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 163; Significance: 6e-87; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 14 - 268
Target Start/End: Original strand, 25459739 - 25459994
Alignment:
Q  14 tactgcatatgtttaaaaaatccattaagtctttcaatttctacacttgatcgaatgcacggaatggtttcaactcaaaatgaaaaatatagacattact 113  Q
    ||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||    
T  25459739 tactgcagatgcttaaaaaacccattaagtctttcaatttctacacttgatcgaatacacgaaatggtttcaactcagaatgaaaaatatagacattact 25459838  T
Q  114 taaagttggttggaagcttattccttggtctgcacttaatccttcattcactccacaccaaaactgaaccaacttata-nnnnnnngcgggctgccctta 212  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||        | ||||||||||||    
T  25459839 taaagttggttggaagcttattccttggtctgcacttgatccttcattcactccacaccaaaaatgaaccaacttatattttttttgtgggctgccctta 25459938  T
Q  213 gcccgagcgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagc 268  Q
    |||||||||||| |||||||| ||||||| ||||||||  |  |||||||||||||    
T  25459939 gcccgagcgggctagcccaaacgggttgcaggctttttcagatcgggctaaaaagc 25459994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 199 - 339
Target Start/End: Original strand, 15614121 - 15614261
Alignment:
Q  199 gcgggctgcccttagcccgagcgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgag 298  Q
    ||||||||||| | |||||| ||||| ||||| ||  || | |||||||||| ||| |||||||||||||| | |||||||| |||||| |||| ||  |    
T  15614121 gcgggctgcccgtggcccgaacgggctagccctaacaggctccgggctttttcggggcgggctaaaaagccctggaaaaattcgggctgcaattattagg 15614220  T
Q  299 cccaagccctaagttttactcgggctaacggtccggcccat 339  Q
    |||||||||||  ||||| |||||||  ||| |||||||||    
T  15614221 cccaagccctatattttattcgggctttcgggccggcccat 15614261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 366
Target Start/End: Complemental strand, 31742988 - 31742842
Alignment:
Q  220 cgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgagcccaagccctaagttttactc 319  Q
    ||||| ||||| |||||||  ||||||||| ||||||||||||||||||  ||  |||||| |||||  |  ||||  ||||||||||| |  |||| ||    
T  31742988 cgggctagccctaatgggtaccgggcttttaagggccgggctaaaaagctctattaaaattcgggctcaatattttaggcccaagccct-atatttattc 31742890  T
Q  320 gggct-aacggtccggcccattcgggctagcccgttttgacagctcta 366  Q
    ||||| ||||| ||||||||| |||||  |||||||||||||||||||    
T  31742889 gggctaaacgggccggcccatacgggccggcccgttttgacagctcta 31742842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 220 - 367
Target Start/End: Complemental strand, 27495992 - 27495845
Alignment:
Q  220 cgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgagcccaagccctaagttttactc 319  Q
    ||||| ||||| || ||||  ||||||||| ||||||||||||||||||| ||  |||||| |||||  |  ||||  ||||||||||| |  |||| ||    
T  27495992 cgggctagccctaacgggtaccgggcttttaagggccgggctaaaaagccctattaaaattcgggctcaatattttaggcccaagccct-atatttattc 27495894  T
Q  320 gggct-aacggtccggcccattcgggctagcccgttttgacagctctaa 367  Q
    ||||| ||||| ||||||||| |||||  | ||||||||||||||||||    
T  27495893 gggctaaacgggccggcccatacgggccggtccgttttgacagctctaa 27495845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 241 - 337
Target Start/End: Original strand, 38838052 - 38838148
Alignment:
Q  241 cgggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgagcccaagccctaagttttactcgggctaacggtccggccc 337  Q
    |||||||||  ||| |||||||| |||||||| ||||||| || ||| |||||||  |||||||||||| |||||| |||||||  ||| |||||||    
T  38838052 cgggcttttatgggtcgggctaacaagccttaaaaaaattcggactgcaatttttaggcccaagccctacgttttattcgggctttcgggccggccc 38838148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 269
Target Start/End: Complemental strand, 27552083 - 27552034
Alignment:
Q  220 cgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagcc 269  Q
    ||||| ||||| |||||||  |||||||||||||||||||||||||||||    
T  27552083 cgggctagccctaatgggtaccgggctttttagggccgggctaaaaagcc 27552034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 219 - 286
Target Start/End: Original strand, 12017479 - 12017546
Alignment:
Q  219 gcgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggct 286  Q
    |||||| ||||| || |||| ||||||||||||||| |||||||||||||| |   ||||||||||||    
T  12017479 gcgggctagccctaacgggtagcgggctttttagggtcgggctaaaaagcccttttaaaatttgggct 12017546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 199 - 286
Target Start/End: Original strand, 25868914 - 25869001
Alignment:
Q  199 gcgggctgcccttagcccgagcgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggct 286  Q
    ||||||| ||||  |||||  ||||| ||||| ||||| | |||||||||||||| ||||||||||||||| ||  |||||| |||||    
T  25868914 gcgggctaccctcggcccgttcgggctagccctaatggatagcgggctttttaggaccgggctaaaaagccctattaaaattcgggct 25869001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 269
Target Start/End: Original strand, 26984447 - 26984517
Alignment:
Q  199 gcgggctgcccttagcccgagcgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagcc 269  Q
    ||||||| ||||  |||||  ||||| ||||| ||||||| |||||||||||| ||||||| |||||||||    
T  26984447 gcgggctaccctcggcccgttcgggctagccctaatgggtagcgggctttttaaggccgggttaaaaagcc 26984517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 269
Target Start/End: Complemental strand, 13311632 - 13311583
Alignment:
Q  220 cgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagcc 269  Q
    ||||| ||||| |||||||  ||||||||||||||||||| |||||||||    
T  13311632 cgggctagccctaatgggtaccgggctttttagggccgggttaaaaagcc 13311583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 17920888 - 17920847
Alignment:
Q  239 tgcgggctttttagggccgggctaaaaagccttagaaaaatt 280  Q
    |||||||||||| |||||||||||||||||| || |||||||    
T  17920888 tgcgggctttttcgggccgggctaaaaagccctaaaaaaatt 17920847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 286
Target Start/End: Complemental strand, 34313821 - 34313780
Alignment:
Q  245 ctttttagggccgggctaaaaagccttagaaaaatttgggct 286  Q
    ||||||||||||||||||||||||| ||  ||||||||||||    
T  34313821 ctttttagggccgggctaaaaagccctattaaaatttgggct 34313780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 26555852 - 26555880
Alignment:
Q  241 cgggctttttagggccgggctaaaaagcc 269  Q
    |||||||||||||||||||||||||||||    
T  26555852 cgggctttttagggccgggctaaaaagcc 26555880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 219 - 366
Target Start/End: Complemental strand, 35710014 - 35709867
Alignment:
Q  219 gcgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgagcccaagccctaagttttact 318  Q
    |||||| ||||| || |||||||||||||||| |||||||||||||||||| |   ||||| ||||||| |||||||  |||||||||||  |||||| |    
T  35710014 gcgggctagcccgaacgggttgcgggctttttcgggccgggctaaaaagccctgataaaatatgggctgcaatttttaggcccaagccctgcgttttatt 35709915  T
Q  319 cgggctaacggtccggcccattcgggctagcccgttttgacagctcta 366  Q
    ||||||  ||| | |||||||  || ||| ||||||||||||||||||    
T  35709914 cgggctttcgggctggcccatatggcctaacccgttttgacagctcta 35709867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 241 - 366
Target Start/End: Complemental strand, 7505336 - 7505211
Alignment:
Q  241 cgggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgagcccaagccctaagttttactcgggctaacggtccggcccatt 340  Q
    |||||||||  |||||||||||||||||| | |||||||| |||||| |||| ||  ||||||||||||  ||||| || ||||  ||| |||||||||     
T  7505336 cgggcttttacgggccgggctaaaaagccctggaaaaattcgggctgcaattattaggcccaagccctacattttattcaggctttcgggccggcccata 7505237  T
Q  341 cgggctagcccgttttgacagctcta 366  Q
    |||||  |||||||||||||||||||    
T  7505236 cgggccggcccgttttgacagctcta 7505211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 220 - 369
Target Start/End: Original strand, 37471525 - 37471674
Alignment:
Q  220 cgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgagcccaagccctaagttttactc 319  Q
    ||||| ||||| || ||||  ||||||||| ||||||||||||||||||| ||  |||||| |||||  |  ||||  ||||||| ||||  ||| | ||    
T  37471525 cgggctagccctaacgggtaccgggcttttaagggccgggctaaaaagccctattaaaattcgggctcaatattttaggcccaagtcctatattt-attc 37471623  T
Q  320 gggctaa-cggtccggcccattcgggctagcccgttttgacagctctaact 369  Q
    ||||||| ||| ||||||||| |||||  ||||||||||||||||||||||    
T  37471624 gggctaaacgggccggcccatacgggccggcccgttttgacagctctaact 37471674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 242 - 321
Target Start/End: Complemental strand, 33604653 - 33604574
Alignment:
Q  242 gggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgagcccaagccctaagttttactcgg 321  Q
    ||||||||| ||| |||||||||||||| | |||||||| |||||  |||| ||  |||||||||||| |||||||||||    
T  33604653 gggctttttcgggtcgggctaaaaagccctggaaaaattcgggctacaattattaggcccaagccctacgttttactcgg 33604574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 241 - 316
Target Start/End: Original strand, 47381487 - 47381562
Alignment:
Q  241 cgggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgagcccaagccctaagtttta 316  Q
    |||||||||| |||||||||||||||||| | |||||||| |||||  |||| ||  |||||||||||| ||||||    
T  47381487 cgggcttttttgggccgggctaaaaagccctggaaaaattcgggctccaattattaggcccaagccctacgtttta 47381562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 199 - 286
Target Start/End: Original strand, 33626910 - 33626997
Alignment:
Q  199 gcgggctgcccttagcccgagcgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggct 286  Q
    ||||||| |||| ||||||  || || ||||| || |||| ||||| |||||||||||||||||||||||| ||  |||||| |||||    
T  33626910 gcgggctaccctcagcccgttcgagctagccctaacgggtagcggggtttttagggccgggctaaaaagccctattaaaattcgggct 33626997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 286
Target Start/End: Complemental strand, 8781595 - 8781529
Alignment:
Q  220 cgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggct 286  Q
    ||||| ||||| || |||| |||||||||||||| ||||||||||||||| ||  |||||| |||||    
T  8781595 cgggctagccctaacgggtagcgggctttttaggaccgggctaaaaagccctattaaaattcgggct 8781529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 269
Target Start/End: Complemental strand, 13598204 - 13598134
Alignment:
Q  199 gcgggctgcccttagcccgagcgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagcc 269  Q
    ||||||| ||||  |||||  ||||| ||||| || || | ||||||||||||||||||||||||||||||    
T  13598204 gcgggctaccctcggcccgttcgggctagccctaacggatagcgggctttttagggccgggctaaaaagcc 13598134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 366
Target Start/End: Original strand, 31272137 - 31272251
Alignment:
Q  252 gggccgggctaaaaagccttagaaaaatttgggctggaatttttgagcccaagccctaagttttactcgggctaacggtccggcccattcgggctagccc 351  Q
    |||||||||||||||||| | |||||||| | |||| |||| ||  ||||||||||||  ||||| |||||||   ||  |||||||| ||| |   |||    
T  31272137 gggccgggctaaaaagccctggaaaaattcgtgctgcaattattaggcccaagccctacattttattcgggcttttgggtcggcccatacggcccgaccc 31272236  T
Q  352 gttttgacagctcta 366  Q
    |||||||||||||||    
T  31272237 gttttgacagctcta 31272251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 307
Target Start/End: Complemental strand, 35710677 - 35710611
Alignment:
Q  241 cgggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgagcccaagccc 307  Q
    ||||||||||||||||||||||||||||| ||   ||||  ||||||||||  |||||||| |||||    
T  35710677 cgggctttttagggccgggctaaaaagccctatttaaataagggctggaataattgagcccgagccc 35710611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 366
Target Start/End: Original strand, 10013398 - 10013431
Alignment:
Q  333 ggcccattcgggctagcccgttttgacagctcta 366  Q
    ||||||||||||||||||| ||||||||||||||    
T  10013398 ggcccattcgggctagcccattttgacagctcta 10013431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 286
Target Start/End: Original strand, 15457214 - 15457259
Alignment:
Q  241 cgggctttttagggccgggctaaaaagccttagaaaaatttgggct 286  Q
    |||||||||||||||| |||||||||||| ||  ||||||||||||    
T  15457214 cgggctttttagggcccggctaaaaagccctattaaaatttgggct 15457259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 367
Target Start/End: Original strand, 47761690 - 47761837
Alignment:
Q  220 cgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgagcccaagccctaagttttactc 319  Q
    ||||| ||||| || ||||  ||||||||| ||||||||||||||||||| ||  |||||| |||||  |  ||||  ||||||||||| |  |||| ||    
T  47761690 cgggctagccctaacgggtaccgggcttttaagggccgggctaaaaagccctattaaaattcgggctcaatattttaggcccaagccct-atatttattc 47761788  T
Q  320 gggct-aacggtccggcccattcgggctagcccgttttgacagctctaa 367  Q
    ||||| ||||| |||| |||| ||||   ||||||||||||| ||||||    
T  47761789 gggctaaacgggccggtccatacgggtcggcccgttttgacatctctaa 47761837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 241 - 337
Target Start/End: Original strand, 42739369 - 42739465
Alignment:
Q  241 cgggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgagcccaagccctaagttttactcgggctaacggtccggccc 337  Q
    |||||||||| |||||||||||||||||| | |||||||| |||||| |||| ||  |||||||||||| |||||| |||||||  ||| |||||||    
T  42739369 cgggcttttttgggccgggctaaaaagccctggaaaaattcgggctgcaattattaggcccaagccctacgttttattcgggctttcgggccggccc 42739465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 199 - 339
Target Start/End: Complemental strand, 15243914 - 15243774
Alignment:
Q  199 gcgggctgcccttagcccgagcgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgag 298  Q
    ||||||||||||||||||| |||||| |||||||| ||| | ||||||||   || ||||||||||||||| |  || |||| |||||| |||| ||  |    
T  15243914 gcgggctgcccttagcccgtgcgggctagcccaaacgggctacgggctttaacggtccgggctaaaaagccctgaaagaattcgggctgcaattattcgg 15243815  T
Q  299 cccaagccctaagttttactcgggctaacggtccggcccat 339  Q
    |||| ||||||  |||||||| ||||  ||| |||||||||    
T  15243814 cccaggccctacattttactcaggctttcgggccggcccat 15243774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 366
Target Start/End: Complemental strand, 6266382 - 6266236
Alignment:
Q  220 cgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgagcccaagccctaagttttactc 319  Q
    ||||| ||||| || ||||  ||||||||| ||||||||||||||||||| ||  |||||| |||||  |  ||||  ||||||||||| |  |||| ||    
T  6266382 cgggctagccctaacgggtaccgggcttttaagggccgggctaaaaagccctattaaaattcgggctcaatattttaggcccaagccct-atatttattc 6266284  T
Q  320 gggct-aacggtccggcccattcgggctagcccgttttgacagctcta 366  Q
    ||||| ||||| ||||||||| |||||  |||||||||||||||||||    
T  6266283 gggctaaacgggccggcccatacgggccggcccgttttgacagctcta 6266236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 284
Target Start/End: Complemental strand, 32018459 - 32018374
Alignment:
Q  199 gcgggctgcccttagcccgagcgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttggg 284  Q
    ||||||| ||||| |||||  ||||| ||||| ||||||| ||| |||||||||| ||||||||||||||| ||  ||||||||||    
T  32018459 gcgggctacccttggcccgttcgggctagccctaatgggtagcgagctttttaggaccgggctaaaaagccctattaaaatttggg 32018374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 199 - 286
Target Start/End: Complemental strand, 957593 - 957506
Alignment:
Q  199 gcgggctgcccttagcccgagcgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggct 286  Q
    ||||||| |||| ||||||  |||||  |||| || |||| |||||||||||||||||||||||||||||| ||  |||||| |||||    
T  957593 gcgggctaccctcagcccgttcgggctggccctaacgggtagcgggctttttagggccgggctaaaaagccctattaaaattcgggct 957506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 366
Target Start/End: Complemental strand, 5927189 - 5927043
Alignment:
Q  220 cgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgagcccaagccctaagttttactc 319  Q
    ||||| ||||| || ||||  ||||||||| ||||||||||||||||||| ||  |||||| |||||  |  ||||  ||||||||||| |  |||| ||    
T  5927189 cgggctagccctaacgggtaccgggcttttaagggccgggctaaaaagccctattaaaattcgggctcaatattttaggcccaagccct-atatttattc 5927091  T
Q  320 gggct-aacggtccggcccattcgggctagcccgttttgacagctcta 366  Q
    ||||| ||||| ||| ||||| |||||  |||||||||||||||||||    
T  5927090 gggctaaacgggccgacccatacgggccggcccgttttgacagctcta 5927043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 366
Target Start/End: Original strand, 24101755 - 24101901
Alignment:
Q  220 cgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgagcccaagccctaagttttactc 319  Q
    ||||| ||||| || ||||  ||||||||| ||||||||||||||||||| ||  |||||| |||||  |  ||||  ||||||||||| |  |||| ||    
T  24101755 cgggctagccctaacgggtaccgggcttttaagggccgggctaaaaagccctattaaaattcgggctcaatattttaggcccaagccct-atatttattc 24101853  T
Q  320 gggc-taacggtccggcccattcgggctagcccgttttgacagctcta 366  Q
    ||||  ||||| ||||||||| |||||  |||||||||||||||||||    
T  24101854 gggcgaaacgggccggcccatacgggccggcccgttttgacagctcta 24101901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 199 - 286
Target Start/End: Original strand, 29940080 - 29940167
Alignment:
Q  199 gcgggctgcccttagcccgagcgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggct 286  Q
    ||||||| ||||  |||||  ||||| ||||| || |||| |||||||||||||||| ||||||||||||| ||  |||||| |||||    
T  29940080 gcgggctaccctcggcccgctcgggctagccctaacgggtagcgggctttttagggctgggctaaaaagccctattaaaattcgggct 29940167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 269
Target Start/End: Complemental strand, 6143036 - 6142966
Alignment:
Q  199 gcgggctgcccttagcccgagcgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagcc 269  Q
    |||||||||||||||||| | ||||| || || || ||||| |||| ||||  ||||||||||||||||||    
T  6143036 gcgggctgcccttagcccaaacgggctagtccgaaagggttacgggtttttacgggccgggctaaaaagcc 6142966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 40027581 - 40027609
Alignment:
Q  241 cgggctttttagggccgggctaaaaagcc 269  Q
    |||||||||||||||||||||||||||||    
T  40027581 cgggctttttagggccgggctaaaaagcc 40027609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 366
Target Start/End: Original strand, 7910165 - 7910311
Alignment:
Q  220 cgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgagcccaagccctaagttttactc 319  Q
    ||||| ||||| || ||||  ||||||||| ||||||||||||||||||| ||  |||||| |||||  |  ||||  ||||||||||| |  |||| ||    
T  7910165 cgggctagccctaacgggtaccgggcttttaagggccgggctaaaaagccctattaaaattcgggctcaatattttaggcccaagccct-atatttattc 7910263  T
Q  320 gggct-aacggtccggcccattcgggctagcccgttttgacagctcta 366  Q
    ||||| ||||| ||||||||| |||||  |||||||||||||||||||    
T  7910264 gggctaaacgggccggcccatacgggccggcccgttttgacagctcta 7910311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 366
Target Start/End: Complemental strand, 43736096 - 43735958
Alignment:
Q  227 gcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgagcccaagccctaagttttactcgggctaa 326  Q
    |||| |||||||| |||||||||  |||||||||||||||||| ||| ||||||||||||  |||||||  ||||| |||||  |||||| |||||||      
T  43736096 gcccgaatgggttacgggcttttacgggccgggctaaaaagccctag-aaaatttgggctccaatttttcggcccaggccctgcgttttattcgggcttt 43735998  T
Q  327 cggtccggcccattcgggctagcccgttttgacagctcta 366  Q
    ||| | ||||||| ||| |   ||| ||||||||||||||    
T  43735997 cgggctggcccatacggcccgacccattttgacagctcta 43735958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 366
Target Start/End: Original strand, 6888731 - 6888856
Alignment:
Q  241 cgggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgagcccaagccctaagttttactcgggctaacggtccggcccatt 340  Q
    |||||||||  |||||||||||||||||| | |||||||| |||||  |||| ||  ||||||||||||  |||||  ||||||  ||| |||||||||     
T  6888731 cgggcttttccgggccgggctaaaaagccctggaaaaattcgggctccaattattaggcccaagccctatattttatgcgggctttcgggccggcccata 6888830  T
Q  341 cgggctagcccgttttgacagctcta 366  Q
    |||||  |||| |||||||| |||||    
T  6888831 cgggccggcccattttgacaactcta 6888856  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 366
Target Start/End: Original strand, 42854300 - 42854425
Alignment:
Q  241 cgggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgagcccaagccctaagttttactcgggctaacggtccggcccatt 340  Q
    ||||||||||  |||||||||||||||||||  ||||||| |||||  |||| ||  |||||||||||| ||||||  ||||||  ||| | |||||||     
T  42854300 cgggcttttttaggccgggctaaaaagccttgaaaaaattcgggctccaattattaggcccaagccctacgttttatgcgggctttcgggctggcccata 42854399  T
Q  341 cgggctagcccgttttgacagctcta 366  Q
    || ||  |||| ||||||||||||||    
T  42854400 cgagccggcccattttgacagctcta 42854425  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 199 - 286
Target Start/End: Complemental strand, 3995159 - 3995072
Alignment:
Q  199 gcgggctgcccttagcccgagcgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggct 286  Q
    ||||||| ||||  |||||  ||||| ||||| || |||| |||||||||||||||||||||||||||||| ||  |||||| |||||    
T  3995159 gcgggctaccctcggcccgttcgggctagccctaacgggtagcgggctttttagggccgggctaaaaagccctattaaaattcgggct 3995072  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 269
Target Start/End: Original strand, 29522805 - 29522854
Alignment:
Q  220 cgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagcc 269  Q
    ||||| ||||| || |||| ||||||||||||||||||||||||||||||    
T  29522805 cgggctagccctaacgggtagcgggctttttagggccgggctaaaaagcc 29522854  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 227 - 340
Target Start/End: Complemental strand, 33983104 - 33982991
Alignment:
Q  227 gcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgagcccaagccctaagttttactcgggctaa 326  Q
    ||||||| ||| | |||||||||  |||||||||||||||||| | |||||||| |||||  |||| ||  ||||||||||||  ||||| | |||||      
T  33983104 gcccaaacgggctccgggcttttccgggccgggctaaaaagccctggaaaaattcgggctccaattattaggcccaagccctacattttatttgggcttt 33983005  T
Q  327 cggtccggcccatt 340  Q
    ||| ||||||||||    
T  33983004 cgggccggcccatt 33982991  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 199 - 286
Target Start/End: Original strand, 3974718 - 3974805
Alignment:
Q  199 gcgggctgcccttagcccgagcgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggct 286  Q
    ||||||| ||||  |||||  ||||| ||||| || |||| ||||| |||||||||||||||||||||||| ||  |||||| |||||    
T  3974718 gcgggctaccctcggcccgttcgggctagccctaacgggtagcgggatttttagggccgggctaaaaagccctattaaaattcgggct 3974805  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 220 - 366
Target Start/End: Original strand, 31412140 - 31412286
Alignment:
Q  220 cgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgagcccaagccctaagttttactc 319  Q
    ||||| ||||| |||||||  |||| |||| ||||||||||||||||||| ||  |||||| |||||  |  ||||  ||||||||||| |  |||| ||    
T  31412140 cgggctagccctaatgggtaccgggtttttaagggccgggctaaaaagccctattaaaattcgggctcaatattttaggcccaagccct-atatttattc 31412238  T
Q  320 gggct-aacggtccggcccattcgggctagcccgttttgacagctcta 366  Q
    ||||| ||||| ||| || || |||||  |||||||||||||||||||    
T  31412239 gggctaaacgggccgccctatacgggccggcccgttttgacagctcta 31412286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 220 - 366
Target Start/End: Complemental strand, 41933387 - 41933241
Alignment:
Q  220 cgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggctggaatttttgagcccaagccctaagttttactc 319  Q
    ||||| ||||| || ||||  ||||||||| ||||||||||| ||||||| ||  |||||| |||||  |  ||||  ||||||||||| |  |||| ||    
T  41933387 cgggctagccctaacgggtaccgggcttttaagggccgggctgaaaagccctattaaaattcgggctcaatattttaggcccaagccct-atatttattc 41933289  T
Q  320 gggct-aacggtccggcccattcgggctagcccgttttgacagctcta 366  Q
    ||||| ||||| ||||||||| ||| |  |||||||||||||||||||    
T  41933288 gggctaaacgggccggcccatacggcccggcccgttttgacagctcta 41933241  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 199 - 286
Target Start/End: Original strand, 51885296 - 51885383
Alignment:
Q  199 gcgggctgcccttagcccgagcgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggct 286  Q
    ||||||| ||||  |||||  ||||| ||||| || |||| |||| ||||||||||||||||||||||||| ||  |||||| |||||    
T  51885296 gcgggctaccctcggcccgttcgggctagccctaacgggtagcggactttttagggccgggctaaaaagccctattaaaattcgggct 51885383  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 269
Target Start/End: Complemental strand, 11486318 - 11486272
Alignment:
Q  223 gccagcccaaatgggttgcgggctttttagggccgggctaaaaagcc 269  Q
    |||||||| || |||||||||| |||||||| |||||||||||||||    
T  11486318 gccagcccgaacgggttgcgggttttttaggaccgggctaaaaagcc 11486272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 286
Target Start/End: Original strand, 32774448 - 32774514
Alignment:
Q  220 cgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggct 286  Q
    ||||| ||||| || ||||  ||||||||||||||||||||||||||||| ||  |||||| |||||    
T  32774448 cgggctagccctaacgggtaccgggctttttagggccgggctaaaaagccctattaaaattcgggct 32774514  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 286
Target Start/End: Complemental strand, 43088079 - 43088013
Alignment:
Q  220 cgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggct 286  Q
    ||||| ||||| || ||||  ||||||||| ||||||||||||||||||| ||  ||||||||||||    
T  43088079 cgggctagccctaacgggtaccgggcttttaagggccgggctaaaaagccctattaaaatttgggct 43088013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 286
Target Start/End: Original strand, 54313352 - 54313418
Alignment:
Q  220 cgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggct 286  Q
    ||||| ||||| || ||||  ||||||||||||||||||||||||||||| ||  |||||| |||||    
T  54313352 cgggctagccctaacgggtaccgggctttttagggccgggctaaaaagccctattaaaattcgggct 54313418  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 268
Target Start/End: Original strand, 1460271 - 1460340
Alignment:
Q  199 gcgggctgcccttagcccgagcgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagc 268  Q
    ||||||| ||||  |||||  ||||| ||||| || || | |||||||||||||||||||||||||||||    
T  1460271 gcgggctaccctcggcccgttcgggctagccctaacggatagcgggctttttagggccgggctaaaaagc 1460340  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 324
Target Start/End: Complemental strand, 19975868 - 19975796
Alignment:
Q  252 gggccgggctaaaaagccttagaaaaatttgggctggaatttttgagcccaagccctaagttttactcgggct 324  Q
    |||||||||||||||||| | |||||||| |||||| |||| ||   |||||||||||  ||||| |||||||    
T  19975868 gggccgggctaaaaagccctggaaaaattcgggctgcaattattagacccaagccctacattttattcgggct 19975796  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 42481043 - 42481071
Alignment:
Q  241 cgggctttttagggccgggctaaaaagcc 269  Q
    |||||||||||||||||||||||||||||    
T  42481043 cgggctttttagggccgggctaaaaagcc 42481071  T

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Target: scaffold1449 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold1449
Description:

Target: scaffold1449; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 273 - 366
Target Start/End: Original strand, 1584 - 1677
Alignment:
Q  273 gaaaaatttgggctggaatttttgagcccaagccctaagttttactcgggctaacggtccggcccattcgggctagcccgttttgacagctcta 366  Q
    |||||||| |||||  |||| || ||||||| |||||  ||||| |||||||  ||| ||||||||| |||||  |||||||||||||||||||    
T  1584 gaaaaattcgggctaaaattattaagcccaaaccctacattttattcgggctttcgggccggcccatacgggccggcccgttttgacagctcta 1677  T

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Target: scaffold0007 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 219 - 286
Target Start/End: Original strand, 231672 - 231739
Alignment:
Q  219 gcgggccagcccaaatgggttgcgggctttttagggccgggctaaaaagccttagaaaaatttgggct 286  Q
    |||||| ||||| || |||| || ||||||||||||||||||||||||||| ||  |||||| |||||    
T  231672 gcgggctagccctaacgggtagcaggctttttagggccgggctaaaaagccctattaaaattcgggct 231739  T

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Target: scaffold0495 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 363
Target Start/End: Original strand, 10375 - 10477
Alignment:
Q  261 taaaaagccttagaaaaatttgggctggaatttttgagcccaagccctaagttttactcgggctaacggtccggcccattcgggctagcccgttttgaca 360  Q
    |||||||  ||||||||||||  |||  ||||||| ||||||||||||| |||||| ||| |||  | | ||||| ||| | || |||||||||||||||    
T  10375 taaaaagttttagaaaaatttaagcttcaatttttaagcccaagccctatgttttattcgagctttcagaccggctcatacaggttagcccgttttgaca 10474  T
Q  361 gct 363  Q
    |||    
T  10475 gct 10477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 286
Target Start/End: Original strand, 103133 - 103179
Alignment:
Q  240 gcgggctttttagggccgggctaaaaagccttagaaaaatttgggct 286  Q
    |||||||||||||||||||||||||||||| ||  |||||| |||||    
T  103133 gcgggctttttagggccgggctaaaaagccctattaaaattcgggct 103179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0661 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0661
Description:

Target: scaffold0661; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 269
Target Start/End: Original strand, 1588 - 1617
Alignment:
Q  240 gcgggctttttagggccgggctaaaaagcc 269  Q
    ||||||||||||||||||||||||||||||    
T  1588 gcgggctttttagggccgggctaaaaagcc 1617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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