View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16780_high_25 (Length: 369)
Name: NF16780_high_25
Description: NF16780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16780_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 38770222 - 38769864
Alignment:
| Q |
1 |
ctgctacactgaaatgatttaatcatttcataaactcggtactacaatgacattaataaacacatatagatataagctgaaaataggattatgtatttga |
100 |
Q |
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| T |
38770222 |
ctgctacactgaaatgatttaatcatttcataaactcggtactacaatgacattaataaacacatatagatataagcggaaaataggattatgtatttga |
38770123 |
T |
|
| Q |
101 |
agacgaggatgaagagtgaataagaaacctctttgcagcaggtaagccaacagttggagggtaacaattgaagttgtaagactgaacagcttctgctaca |
200 |
Q |
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| T |
38770122 |
agacgagggtgaagagtgaataacaaacctctttgcagcaggtaagccaacagttggagggtaacaattgaagttgtaagactgaacagcttctgctaca |
38770023 |
T |
|
| Q |
201 |
gcctgatgagctactgaggtagtcctaaacaatggattatcagtgggatctaccctacataaaggaataacagttttgttgttttgattgttgtttatag |
300 |
Q |
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| T |
38770022 |
gcctgatgagctactgaggtagtcctaaacaatggattatcagtgggatctaccctacataaaggaataacagttttgttgttttgattgttgtttatag |
38769923 |
T |
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| Q |
301 |
tatccataagcatgttatagacacctctaactgaaactgctgaagagttcaaccctttg |
359 |
Q |
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| T |
38769922 |
tatccataagcatgttatagacacctctaacagaaactgctgaagagttcaaacctttg |
38769864 |
T |
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