View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16780_high_26 (Length: 365)
Name: NF16780_high_26
Description: NF16780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16780_high_26 |
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Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 34 - 349
Target Start/End: Complemental strand, 34972259 - 34971947
Alignment:
| Q |
34 |
taagaagaaaagaaagaaaatcaaggaagtactataagaatattcctacctaattacaaaatgttacaagaattgagaggttattcctacataaaaatta |
133 |
Q |
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| T |
34972259 |
taagaagaaaagaaagaaaatcaaggaagtacta--agaatattcctacctaattacaaaatgttacaagaattgagaggttattcctacataaaaatta |
34972162 |
T |
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| Q |
134 |
ctcaaaatgtgctatgcaattcttcttnnnnnnntgaatattgttgtttcttcatgtgtacaggtaccttcctccttacacctcattcctcccattgaaa |
233 |
Q |
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| T |
34972161 |
ctcaaaatgtgctatgcaattcttcttaaaaaa-tgaacattgttgtttcttcatgtgtacaggtaccttcctccttacacctcattcctcccattgaaa |
34972063 |
T |
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| Q |
234 |
agtgatgggaaaaactcagaaagaagtaagaggatgaaaaatataaggggaaaagttacagagaatttgatattttctcaactctcctatttagtcatat |
333 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34972062 |
agtgatgggaaaaactcagaaagaagtaagaggatgaaaaagataaggggaaaagttacagagaatttgatattttctcaactctcctatttagtcatat |
34971963 |
T |
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| Q |
334 |
tcatcattctagtgtg |
349 |
Q |
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| T |
34971962 |
tcatcattctagtgtg |
34971947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 195 - 346
Target Start/End: Complemental strand, 34953392 - 34953241
Alignment:
| Q |
195 |
aggtaccttcctccttacacctcattcctcccattgaaaagtgatgggaaaaactcagaaagaagtaagaggatgaaaaatataaggggaaaagttacag |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||| ||||||||| | ||| ||||||||||||| |
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| T |
34953392 |
aggtaccttcctccttacacctcattcctcccattgaaatatgatgggaaaatttcagaaaacagtaagaagatgaaaaagagaagaggaaaagttacag |
34953293 |
T |
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| Q |
295 |
agaatttgatattttctcaactctcctatttagtcatattcatcattctagt |
346 |
Q |
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| T |
34953292 |
agaatttgatattttctcaactctcctatttagtcatattcatcattctagt |
34953241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 226
Target Start/End: Complemental strand, 35032944 - 35032908
Alignment:
| Q |
190 |
tgtacaggtaccttcctccttacacctcattcctccc |
226 |
Q |
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| T |
35032944 |
tgtacaggtaccttccaccttacacctcattcctccc |
35032908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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