View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16780_high_28 (Length: 358)
Name: NF16780_high_28
Description: NF16780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16780_high_28 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 10 - 341
Target Start/End: Complemental strand, 31379591 - 31379260
Alignment:
| Q |
10 |
attatactgtaagaggctgtggaagattccctacaacaattgttgtacacataggaaaaatccttctcaaacccgccgttcaccataagatttgttttct |
109 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31379591 |
attatattgtaagaggctgtggaagattccctacaacaattgttgtacacataggaaaaatccttctcaaacccgccgttcaccataagatttgttttct |
31379492 |
T |
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| Q |
110 |
cctcaaggtcttcgataggttctttgttcagaatgtttgtcatgaagttgggattcaccagcaccaattgagagtgttcatannnnnnngcatgccctaa |
209 |
Q |
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|||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
31379491 |
cctcaaggtctttgataggttctttgttcagcatgtttgtcatgaagttgggattcaccagcaccaattgagagtgttcatatttttttgcatgccctaa |
31379392 |
T |
|
| Q |
210 |
aggaatttgaatgaactttgaattttggtgcttaagctccttcacacaagtctccaatttttctatcatactgccaatatctgtactactgatcaccaat |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31379391 |
aggaatttgaatgaactttgaattttggtgcttaagctccttcacacaagtctccaatttttctatcatactgccaatatctgtactactgatcaccaat |
31379292 |
T |
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| Q |
310 |
tgttgtgaatccatgctattgatagcacttga |
341 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
31379291 |
tgttgtgaatccatgctattgatagcacttga |
31379260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 10 - 341
Target Start/End: Complemental strand, 31330809 - 31330478
Alignment:
| Q |
10 |
attatactgtaagaggctgtggaagattccctacaacaattgttgtacacataggaaaaatccttctcaaacccgccgttcaccataagatttgttttct |
109 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31330809 |
attatattgtaagaggctgtggaagattccctacaacaattgttgtacacataggaaaaatccttctcaaacccaccgttcaccataagatttgttttct |
31330710 |
T |
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| Q |
110 |
cctcaaggtcttcgataggttctttgttcagaatgtttgtcatgaagttgggattcaccagcaccaattgagagtgttcatannnnnnngcatgccctaa |
209 |
Q |
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|||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
31330709 |
cctcaaggtctttgataggttctttgttcagcatgtttgtcatgaagttgggattcaccagcaccaattgagagtgttcatatttttttgcatgccctaa |
31330610 |
T |
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| Q |
210 |
aggaatttgaatgaactttgaattttggtgcttaagctccttcacacaagtctccaatttttctatcatactgccaatatctgtactactgatcaccaat |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31330609 |
aggaatttgaatgaactttgaattttggtgcttaagctccttcacacaagtctccaatttttctatcatactgccaatatctgtactactgatcaccaat |
31330510 |
T |
|
| Q |
310 |
tgttgtgaatccatgctattgatagcacttga |
341 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
31330509 |
tgttgtgaatccatgctattgatagcacttga |
31330478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 83
Target Start/End: Complemental strand, 31318246 - 31318209
Alignment:
| Q |
46 |
caattgttgtacacataggaaaaatccttctcaaaccc |
83 |
Q |
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| T |
31318246 |
caattgttgtacacatcggaaaaatccttctcaaaccc |
31318209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 31369356 - 31369320
Alignment:
| Q |
46 |
caattgttgtacacataggaaaaatccttctcaaacc |
82 |
Q |
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|||||||||||||||| |||||||||||||||||||| |
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| T |
31369356 |
caattgttgtacacatcggaaaaatccttctcaaacc |
31369320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 139
Target Start/End: Complemental strand, 31314052 - 31313948
Alignment:
| Q |
35 |
attccctacaacaattgttgtacacataggaaaaatccttctcaaacccgccgttcaccataagatttgttttctcctcaaggtcttcgataggttcttt |
134 |
Q |
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||||||||| || |||||||||||||| | |||||| ||||||||||| | || |||||| ||||||| | ||||| ||||||| ||| | |||||| |
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| T |
31314052 |
attccctacgactattgttgtacacatcgaaaaaattgttctcaaacccagccctcgccataacatttgttgtttcctctaggtctttgatggtttcttt |
31313953 |
T |
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| Q |
135 |
gttca |
139 |
Q |
| |
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|||| |
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| T |
31313952 |
cttca |
31313948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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