View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16780_high_29 (Length: 355)
Name: NF16780_high_29
Description: NF16780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16780_high_29 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 51224181 - 51223848
Alignment:
| Q |
1 |
ttggccttgcctatatgtactcagattacaaaatgcatcaacagttggaattctcaggtnnnnnnn-tctctttttagtttccaaaatgttttctcatga |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
51224181 |
ttggccttgcctatatgtactcagattacaaaatgcatcaacagttggaattctcaggtaaaaaaaatctctttttagtttccaaaatgttttctcatga |
51224082 |
T |
|
| Q |
100 |
aaatatgagaataactgctatgcactgtatttgtaaaaagcatgcatcaaatcacatctcaacacatagataattgtggagatattttaggaattaacat |
199 |
Q |
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||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51224081 |
aaatatgagaataactgatatgcactgtatttgtaaaaagtatgcatcaaatcccatctcaacacatagataattgtggagatattttaggaattaacat |
51223982 |
T |
|
| Q |
200 |
taaccgtttggcataatgataagatgcgattggatgcaagtgaaaaatatttttacactgacagtgaaatttgtttatgatgatgcatataaatgtggtt |
299 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51223981 |
taaccgtttggcataatgatgagatgtgattggatgcaagtgaaaaatatttttacactgacagtgaaatttgtttatgatgatgcatataaatgtggtt |
51223882 |
T |
|
| Q |
300 |
tcaggtagctgagagggcactgtatgtgtggaac |
333 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
51223881 |
tcaggtagctgagagggcactgtatgtgtggaac |
51223848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 5484917 - 5484970
Alignment:
| Q |
140 |
catgcatcaaatcacatctcaacacatagataattgtggagatattttaggaat |
193 |
Q |
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| T |
5484917 |
catgcatccaatcacatctcaccttttagatatttgtggagatattttaggaat |
5484970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 36224244 - 36224292
Alignment:
| Q |
151 |
tcacatctcaacacatagataattgtggagatattttaggaattaacat |
199 |
Q |
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|||||||||| ||||||||||||| |||||||||| ||||| |||||| |
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| T |
36224244 |
tcacatctcactacatagataattgaggagatatttcaggaactaacat |
36224292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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