View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16780_high_34 (Length: 332)

Name: NF16780_high_34
Description: NF16780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16780_high_34
NF16780_high_34
[»] scaffold0192 (1 HSPs)
scaffold0192 (54-308)||(19120-19377)
[»] chr5 (3 HSPs)
chr5 (57-308)||(6701899-6702149)
chr5 (55-314)||(11298471-11298730)
chr5 (54-302)||(37340170-37340417)
[»] chr3 (3 HSPs)
chr3 (66-308)||(15993035-15993269)
chr3 (52-86)||(50719204-50719238)
chr3 (52-86)||(50793610-50793644)
[»] chr1 (4 HSPs)
chr1 (55-306)||(41862753-41863005)
chr1 (55-133)||(51382509-51382588)
chr1 (7-37)||(20952704-20952734)
chr1 (52-88)||(38509035-38509071)
[»] chr6 (7 HSPs)
chr6 (113-308)||(20910836-20911030)
chr6 (113-308)||(20925284-20925478)
chr6 (55-119)||(31661143-31661208)
chr6 (55-146)||(15298383-15298475)
chr6 (55-103)||(20910753-20910801)
chr6 (55-103)||(20925201-20925249)
chr6 (54-90)||(7018679-7018715)
[»] chr4 (4 HSPs)
chr4 (54-151)||(2304243-2304341)
chr4 (47-314)||(33315707-33315974)
chr4 (54-124)||(16030588-16030659)
chr4 (215-296)||(47965657-47965738)
[»] chr8 (9 HSPs)
chr8 (54-118)||(45239360-45239425)
chr8 (55-119)||(42319909-42319974)
chr8 (54-193)||(43418199-43418342)
chr8 (55-145)||(34310287-34310378)
chr8 (55-94)||(38684861-38684900)
chr8 (48-86)||(4970052-4970090)
chr8 (53-90)||(32721323-32721360)
chr8 (54-86)||(9885367-9885399)
chr8 (264-308)||(43418416-43418460)
[»] chr7 (3 HSPs)
chr7 (55-185)||(30063277-30063408)
chr7 (54-90)||(39262778-39262814)
chr7 (54-90)||(48844140-48844176)
[»] chr2 (1 HSPs)
chr2 (55-122)||(6673889-6673957)
[»] scaffold0790 (1 HSPs)
scaffold0790 (54-94)||(3962-4002)
[»] scaffold0188 (1 HSPs)
scaffold0188 (55-88)||(28312-28345)


Alignment Details
Target: scaffold0192 (Bit Score: 158; Significance: 5e-84; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 54 - 308
Target Start/End: Original strand, 19120 - 19377
Alignment:
Q  54 aactagaacgccgacccgtgcgccgcatgggtcttatgagccggaataattgatacacaataaaacaaaatatgtt-ggaatggaatttaaaaagtcaga 152  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||| ||||||||||||    
T  19120 aactagaacgccgatccgtgcgccgcacgggtcttatgagccggaataactaatacacaataaaacaaaatatgtttggaatggaatgtaaaaagtcaga 19219  T
Q  153 atacataaacaaaatttattggagtcactaaagctaccgtatcggaaaatatcgtatcataaaccaaacatgttgcaacaaagatataaacggttcttaa 252  Q
    |||||||||||||||||||   |||||| ||||||||| |||||| ||||||||||||| |||||||||||||| ||||||||||| ||| |||| ||||    
T  19220 atacataaacaaaatttatcaaagtcacgaaagctaccatatcgggaaatatcgtatcacaaaccaaacatgttacaacaaagataaaaatggtttttaa 19319  T
Q  253 aaagaacatagcata-tattagggagtattacaca-tttccaaatacttcttcgtaca 308  Q
    | ||||||||||||| ||||||||||||||||||| |||  |||||||||||||||||    
T  19320 agagaacatagcatattattagggagtattacacatttttgaaatacttcttcgtaca 19377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 138; Significance: 4e-72; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 57 - 308
Target Start/End: Complemental strand, 6702149 - 6701899
Alignment:
Q  57 tagaacgccgacccgtgcgccgcatgggtcttatgagccggaataatt-gatacacaataaaacaaaatatgttggaatggaatttaaaaagtcagaata 155  Q
    |||||||||||||||||| ||||| |||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||| ||| ||||    
T  6702149 tagaacgccgacccgtgcaccgcacgggtcttatgagccagaataatttgatacacaataaaacgaaatatgttggaatggaatttaaaaaatcaaaata 6702050  T
Q  156 cataaacaaaatttattggagtcactaaagctaccgtatcggaaaatatcgtatcataaaccaaacatgttgcaacaaagatataaacggttcttaaaaa 255  Q
    || ||| ||||||||| |||||||| |||| ||||||||||  || |||||||||| |||||||  || || |||||||||||||||| ||| ||||| |    
T  6702049 cacaaataaaatttatcggagtcaccaaagttaccgtatcgagaagtatcgtatcacaaaccaa--atattacaacaaagatataaacagttgttaaaga 6701952  T
Q  256 gaacatagcatatattagggagtattacacatttccaaatacttcttcgtaca 308  Q
     ||||||||||||||||||||||||| |||||||| |||||||||||| ||||    
T  6701951 caacatagcatatattagggagtattgcacatttcaaaatacttcttcataca 6701899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 55 - 314
Target Start/End: Original strand, 11298471 - 11298730
Alignment:
Q  55 actagaacgccgacccgtgcgccgcatgggtcttatgagccggaataa-ttgatacacaataaaacaaaatatgttggaatggaatttaaaaagtcagaa 153  Q
    |||||||||||||||||||||||| ||||||||||||||| |||| || |||||||| |||||||  ||||||   ||||||||||||||||| | | |     
T  11298471 actagaacgccgacccgtgcgccgtatgggtcttatgagctggaacaatttgatacataataaaatgaaatatagaggaatggaatttaaaaaattaaac 11298570  T
Q  154 tacataaacaaaatttattggagtcactaaagctaccgtatcggaaaatatcgtatcataaaccaaacatgttgcaacaaagatataaacggttcttaaa 253  Q
    |||| |||  ||||||| | | |  || ||||||||  |||||  |||||| |||||    |||||||||||| || |||||| |||||||||| ||||     
T  11298571 tacaaaaaagaaattta-tcgcgaaacaaaagctacaatatcgataaatattgtatcgcctaccaaacatgttacaccaaagaaataaacggtttttaat 11298669  T
Q  254 aagaacatagcatatattagggagtattacacatttccaaatacttcttcgtacatgacat 314  Q
     | |||||| ||||||||| | | ||||||||||||| ||||||||||| ||||| |||||    
T  11298670 gacaacataacatatattatgaaatattacacatttcaaaatacttctttgtacacgacat 11298730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 302
Target Start/End: Complemental strand, 37340417 - 37340170
Alignment:
Q  54 aactagaacgccgacccgtgcgccgcatgggtcttatgagccggaa-taattgatacacaataaaacaaaatatgttggaatggaatttaaaaagtcaga 152  Q
    ||||||||||||||||||||| ||||| ||||||||| ||| ||||  |||||||||| |||||||  ||||||  ||||||| |||||||||| | | |    
T  37340417 aactagaacgccgacccgtgccccgcacgggtcttattagctggaacaaattgatacataataaaatgaaatatagtggaatgaaatttaaaaaattaaa 37340318  T
Q  153 atacataaacaaaatttattggagtcactaaagctaccgtatcggaaaatatcgtatcataaaccaaacatgttgcaacaaagatataaacggttcttaa 252  Q
      ||| |||| ||||||||  |    || ||||||||  |||||  ||||||  ||||    |||||||||||| || |||||| ||||||| || ||||    
T  37340317 caacaaaaacgaaatttat--gcaaaacaaaagctacaatatcgataaatattttatcgcctaccaaacatgttacaccaaagaaataaacgatttttaa 37340220  T
Q  253 aaagaacatagcatatattagggagtattacacatttccaaatacttctt 302  Q
      | |||||| |||||||||   | ||||||||||||| |||||||||||    
T  37340219 ttacaacataacatatattattaaatattacacatttcgaaatacttctt 37340170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 133; Significance: 4e-69; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 66 - 308
Target Start/End: Original strand, 15993035 - 15993269
Alignment:
Q  66 gacccgtgcgccgcatgggtcttatgagccggaataattgatacacaataaaacaaaatatgttggaatggaatttaaaaagtcagaatacataaacaaa 165  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  15993035 gacccgtgcgccgcacgggtcttatgaaccggaataattgatacacaataaaaggaaatatgttggaatggaatttaaaaagtcagaatacataaacaaa 15993134  T
Q  166 atttattggagtcactaaagctaccgtatcggaaaatatcgtatcataaaccaaacatgttgcaacaaagatataaacggttcttaaaaagaacatagca 265  Q
    |||||| |||||||  |||| ||      ||| ||||||||||||| |||| ||||||||| ||||||  ||||| || ||| ||||| ||||||||| |    
T  15993135 atttatcggagtcagcaaagtta------cgggaaatatcgtatcacaaacaaaacatgttacaacaa--atatatacagtttttaaagagaacatagta 15993226  T
Q  266 tatattagggagtattacacatttccaaatacttcttcgtaca 308  Q
    ||||||||||||||||||||||||| ||||||||||| |||||    
T  15993227 tatattagggagtattacacatttcgaaatacttctttgtaca 15993269  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 86
Target Start/End: Complemental strand, 50719238 - 50719204
Alignment:
Q  52 tcaactagaacgccgacccgtgcgccgcatgggtc 86  Q
    ||||||||||||||||||||||||||||| |||||    
T  50719238 tcaactagaacgccgacccgtgcgccgcacgggtc 50719204  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 86
Target Start/End: Original strand, 50793610 - 50793644
Alignment:
Q  52 tcaactagaacgccgacccgtgcgccgcatgggtc 86  Q
    ||||||||||||||||||||||||||||| |||||    
T  50793610 tcaactagaacgccgacccgtgcgccgcacgggtc 50793644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 55 - 306
Target Start/End: Original strand, 41862753 - 41863005
Alignment:
Q  55 actagaacgccgacccgtgcgccgcatgggtcttatgagccggaataatt-gatacacaataaaacaaaatatgttggaatggaatttaaaaagtcagaa 153  Q
    |||||||||| ||||||||| ||||||||||| |||||| || ||||||| ||||||||||||||  ||||||||||||||| |||||||||| | ||||    
T  41862753 actagaacgctgacccgtgcaccgcatgggtcgtatgagtcgaaataatttgatacacaataaaatgaaatatgttggaatgaaatttaaaaaattagaa 41862852  T
Q  154 tacataaacaaaatttattggagtcactaaagctaccgtatcggaaaatatcgtatcataaaccaaacatgttgcaacaaagatataaacggttcttaaa 253  Q
    ||||| |||||||||||| | |||||| ||||||| | |||||| ||||||||||||||||||    |||||| ||||||||||||||||| || |||||    
T  41862853 tacatgaacaaaatttatcgaagtcaccaaagctaacatatcggtaaatatcgtatcataaacttttcatgttacaacaaagatataaacgatttttaaa 41862952  T
Q  254 aagaacatagcatatattagggagtattacacatttccaaatacttcttcgta 306  Q
     |  ||||| ||||||||||||||||| ||||||||| |||||||||||||||    
T  41862953 gacgacataacatatattagggagtatcacacatttcaaaatacttcttcgta 41863005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 55 - 133
Target Start/End: Original strand, 51382509 - 51382588
Alignment:
Q  55 actagaacgccgacccgtgcgccgcatgggtcttatgagccggaataa-ttgatacacaataaaacaaaatatgttggaa 133  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||| ||||||| |||||| ||||||    
T  51382509 actagaacgccgacccatgcgccgcacgggtcttatgagccggaataatttgatacacgataaaacgaaatatattggaa 51382588  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 37
Target Start/End: Complemental strand, 20952734 - 20952704
Alignment:
Q  7 attgacggtcgcatcaagcgggggacaagat 37  Q
    |||||||||||||||||||||||||||||||    
T  20952734 attgacggtcgcatcaagcgggggacaagat 20952704  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 38509071 - 38509035
Alignment:
Q  52 tcaactagaacgccgacccgtgcgccgcatgggtctt 88  Q
    |||||||||||||| |||||||||||||| |||||||    
T  38509071 tcaactagaacgccaacccgtgcgccgcacgggtctt 38509035  T

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Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 113 - 308
Target Start/End: Original strand, 20910836 - 20911030
Alignment:
Q  113 ataaaacaaaatatgttggaatggaatttaaaaagtcagaatacataaacaaaatttattggagtcactaaagctaccgtatcggaaaatatcgtatcat 212  Q
    ||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||| |||| ||||||||||| || ||||   |||     
T  20910836 ataaaacgaaatatgttggaatggaatttaaaaaatcaaaatacataaacaaaatttatcggagtcaccaaagttaccgtatcgggaagtatcaactcac 20910935  T
Q  213 aaaccaaacatgttgcaacaaagatataaacggttcttaaaaagaacatagcatatattagggagtattacacatttccaaatacttcttcgtaca 308  Q
    || ||||| ||||| ||||||||||| |||||||| ||||| | |||||||||||||||||||||| |||||| |||| |||||||||||| ||||    
T  20910936 aagccaaatatgttacaacaaagatacaaacggtttttaaagacaacatagcatatattagggagt-ttacacgtttcgaaatacttcttcataca 20911030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 113 - 308
Target Start/End: Original strand, 20925284 - 20925478
Alignment:
Q  113 ataaaacaaaatatgttggaatggaatttaaaaagtcagaatacataaacaaaatttattggagtcactaaagctaccgtatcggaaaatatcgtatcat 212  Q
    ||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||| |||| ||||||||||| || ||||   |||     
T  20925284 ataaaacgaaatatgttggaatggaatttaaaaaatcaaaatacataaacaaaatttatcggagtcaccaaagttaccgtatcgggaagtatcaactcac 20925383  T
Q  213 aaaccaaacatgttgcaacaaagatataaacggttcttaaaaagaacatagcatatattagggagtattacacatttccaaatacttcttcgtaca 308  Q
    || ||||| ||||| ||||||||||| |||||||| ||||| | |||||||||||||||||||||| |||||| |||| |||||||||||| ||||    
T  20925384 aagccaaatatgttacaacaaagatacaaacggtttttaaagacaacatagcatatattagggagt-ttacacgtttcgaaatacttcttcataca 20925478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 31661143 - 31661208
Alignment:
Q  55 actagaacgccgacccgtgcgccgcatgggtcttatgagccggaataa-ttgatacacaataaaac 119  Q
    |||||||||| |||||||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  31661143 actagaacgcggacccgtgcgccgcacaggtcttatgagccggaataatttgatacacaataaaac 31661208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 146
Target Start/End: Complemental strand, 15298475 - 15298383
Alignment:
Q  55 actagaacgccgacccgtgcgccgcatgggtcttatgagccggaataa-ttgatacacaataaaacaaaatatgttggaatggaatttaaaaa 146  Q
    ||||||||||||| ||||||||||||  |||||||| ||| ||||||| |||||||| |||||||  ||||||  ||||||||||||||||||    
T  15298475 actagaacgccgatccgtgcgccgcacaggtcttattagctggaataatttgatacataataaaatgaaatatagtggaatggaatttaaaaa 15298383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 20910753 - 20910801
Alignment:
Q  55 actagaacgccgacccgtgcgccgcatgggtcttatgagccggaataat 103  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  20910753 actagaacgccgacccgtgcgccgcacgggtcttatgagccggaataat 20910801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 20925201 - 20925249
Alignment:
Q  55 actagaacgccgacccgtgcgccgcatgggtcttatgagccggaataat 103  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  20925201 actagaacgccgacccgtgcgccgcacgggtcttatgagccggaataat 20925249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 7018715 - 7018679
Alignment:
Q  54 aactagaacgccgacccgtgcgccgcatgggtcttat 90  Q
    |||||||||| ||||||||||||||||||||||||||    
T  7018715 aactagaacgtcgacccgtgcgccgcatgggtcttat 7018679  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 54 - 151
Target Start/End: Complemental strand, 2304341 - 2304243
Alignment:
Q  54 aactagaacgccgacccgtgcgccgcatgggtcttatgagccggaataa-ttgatacacaataaaacaaaatatgttggaatggaatttaaaaagtcag 151  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||| |||||| |||||||||| |||||||||  ||||||||||||||| ||||    
T  2304341 aactagaacgccgacccgtgcgccgcatgggtcttatgagccaaaataatttgataaacaataaaacgaaatatgttaaaatggaatttaaaaaatcag 2304243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 314
Target Start/End: Complemental strand, 33315974 - 33315707
Alignment:
Q  47 taatgtcaactagaacgccgacccgtgcgccgcatgggtcttatgagccggaataatt-gatacacaataaaacaaaatatgttggaatggaatttaaaa 145  Q
    |||||| |||||||||||||| | || ||||||| ||||||||||||| ||||||||| |||| | | |||||  ||||||  | ||||| |||||||||    
T  33315974 taatgtaaactagaacgccgatctgttcgccgcacgggtcttatgagctggaataatttgatatatagtaaaatgaaatattgtagaatgaaatttaaaa 33315875  T
Q  146 agtcagaatacataaacaaaatttattggagtcactaaagctaccgtatcggaaaatatcgtatcataaaccaaacatgttgcaacaaagatataaacgg 245  Q
    | | | | |  | |||| |||||||| |     || ||||||||  |||||| |||||| |||||   ||||||||||||| || |||||| ||||||||    
T  33315874 aattaaactgtagaaacgaaatttatcgccaa-acaaaagctacaatatcggtaaatattgtatcgccaaccaaacatgttacaccaaagaaataaacgg 33315776  T
Q  246 ttcttaaaaagaacatagcatatattagggagtattacacatttccaaatacttcttcgtacatgacat 314  Q
    || ||||  | |||||||||||||||| | | ||||| ||||||| ||||| ||||||||||| |||||    
T  33315775 tttttaatgacaacatagcatatattatgaaatattatacatttcgaaatatttcttcgtacacgacat 33315707  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 54 - 124
Target Start/End: Original strand, 16030588 - 16030659
Alignment:
Q  54 aactagaacgccgacccgtgcgccgcatgggtcttatgagccggaataa-ttgatacacaataaaacaaaat 124  Q
    ||||||||| ||||||||||||||||| |||||||||||||  |||||| ||||||||||||||||| ||||    
T  16030588 aactagaacaccgacccgtgcgccgcacgggtcttatgagctcgaataatttgatacacaataaaacgaaat 16030659  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 296
Target Start/End: Original strand, 47965657 - 47965738
Alignment:
Q  215 accaaacatgttgcaacaaagatataaacggttcttaaaaagaacatagcatatattagggagtattacacatttccaaata 296  Q
    |||||||||||| || |||||| |||||||||| ||||  | |||||| ||||||||| | | ||||||||||||| |||||    
T  47965657 accaaacatgttacaccaaagaaataaacggtttttaatgacaacataacatatattatgaaatattacacatttcgaaata 47965738  T

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Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 45239360 - 45239425
Alignment:
Q  54 aactagaacgccgacccgtgcgccgcatgggtcttatgagccggaat-aattgatacacaataaaa 118  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  45239360 aactagaacgccgacccgtgcgccgcacgggtcttatgagccggaataaattgatacacaataaaa 45239425  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 42319974 - 42319909
Alignment:
Q  55 actagaacgccgacccgtgcgccgcatgggtcttatgagccggaataa-ttgatacacaataaaac 119  Q
    |||||||||| |||||||||||||||   ||||||||||||||||||| |||||||||||||||||    
T  42319974 actagaacgcggacccgtgcgccgcacaagtcttatgagccggaataatttgatacacaataaaac 42319909  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 193
Target Start/End: Original strand, 43418199 - 43418342
Alignment:
Q  54 aactagaacgccgacccgtgcgccgcatgggtcttatgagccggaataat-tgatac---acaataaaacaaaatatgttggaatggaatttaaaaagtc 149  Q
    |||||||||||||||||||||||||||  ||||| ||||||||  ||||  |||||    | ||||| |  |||||||||||| ||||||||| ||||||    
T  43418199 aactagaacgccgacccgtgcgccgcacaggtctaatgagccgttataaaatgatagtatataataatatgaaatatgttggagtggaatttataaagtc 43418298  T
Q  150 agaatacataaacaaaatttattggagtcactaaagctaccgta 193  Q
     ||||||| | ||||||||||| ||||| ||| ||| |||||||    
T  43418299 tgaatacaaatacaaaatttatcggagtaactgaaggtaccgta 43418342  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 55 - 145
Target Start/End: Complemental strand, 34310378 - 34310287
Alignment:
Q  55 actagaacgccgacccgtgcgccgcatgggtcttatgagccggaata-attgatacacaataaaacaaaatatgttggaatggaatttaaaa 145  Q
    |||||| | ||||||||||||||||| ||||||||||||| | ||||  |||||||  | ||||||| ||||| ||||||||||| ||||||    
T  34310378 actagatctccgacccgtgcgccgcacgggtcttatgagctgaaatattttgatactaagtaaaacataatattttggaatggaacttaaaa 34310287  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 55 - 94
Target Start/End: Complemental strand, 38684900 - 38684861
Alignment:
Q  55 actagaacgccgacccgtgcgccgcatgggtcttatgagc 94  Q
    |||||| ||||||||||||||||||| |||||||||||||    
T  38684900 actagatcgccgacccgtgcgccgcacgggtcttatgagc 38684861  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 86
Target Start/End: Complemental strand, 4970090 - 4970052
Alignment:
Q  48 aatgtcaactagaacgccgacccgtgcgccgcatgggtc 86  Q
    |||||| |||||||||||||||||||||||||| |||||    
T  4970090 aatgtctactagaacgccgacccgtgcgccgcacgggtc 4970052  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 90
Target Start/End: Complemental strand, 32721360 - 32721323
Alignment:
Q  53 caactagaacgccgacccgtgcgccgcatgggtcttat 90  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  32721360 caactagaacgccgacccgtgcgccgcacaggtcttat 32721323  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 9885367 - 9885399
Alignment:
Q  54 aactagaacgccgacccgtgcgccgcatgggtc 86  Q
    ||||||||||||||||||||||||||| |||||    
T  9885367 aactagaacgccgacccgtgcgccgcacgggtc 9885399  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 308
Target Start/End: Original strand, 43418416 - 43418460
Alignment:
Q  264 catatattagggagtattacacatttccaaatacttcttcgtaca 308  Q
    |||||||||||||| |||| ||||| | |||||||||||||||||    
T  43418416 catatattagggagcattaaacattgcgaaatacttcttcgtaca 43418460  T

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Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 55 - 185
Target Start/End: Complemental strand, 30063408 - 30063277
Alignment:
Q  55 actagaacgccgacccgtgcgccgcatgggtcttatgagccggaataatt-gatacacaataaaacaaaatatgttggaatggaatttaaaaagtcagaa 153  Q
    |||||||||||||||| |||||| || |||||| || | | | ||||||| |||||||||||||||||||||| || ||||||||| | |||| | ||||    
T  30063408 actagaacgccgacccatgcgccacacgggtctcataaactgaaataatttgatacacaataaaacaaaatatattagaatggaatctgaaaaattagaa 30063309  T
Q  154 tacataaacaaaatttattggagtcactaaag 185  Q
     ||| ||||||||||||||| |||||| ||||    
T  30063308 gacaaaaacaaaatttattgaagtcaccaaag 30063277  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 39262778 - 39262814
Alignment:
Q  54 aactagaacgccgacccgtgcgccgcatgggtcttat 90  Q
    ||||||||||||||||||||||||||| |||||||||    
T  39262778 aactagaacgccgacccgtgcgccgcacgggtcttat 39262814  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 48844140 - 48844176
Alignment:
Q  54 aactagaacgccgacccgtgcgccgcatgggtcttat 90  Q
    |||||||||||||||||||||| |||| |||||||||    
T  48844140 aactagaacgccgacccgtgcgtcgcacgggtcttat 48844176  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 55 - 122
Target Start/End: Complemental strand, 6673957 - 6673889
Alignment:
Q  55 actagaacgccgacccgtgcgccgcatgggtcttatgagccggaataa-ttgatacacaataaaacaaa 122  Q
    ||||||| |||||||||||||||||| |||||||||||||  |||||| ||| ||||||||||||||||    
T  6673957 actagaaggccgacccgtgcgccgcacgggtcttatgagcaagaataatttggtacacaataaaacaaa 6673889  T

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Target: scaffold0790 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0790
Description:

Target: scaffold0790; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 94
Target Start/End: Complemental strand, 4002 - 3962
Alignment:
Q  54 aactagaacgccgacccgtgcgccgcatgggtcttatgagc 94  Q
    ||||||| ||||||||||||||||||| |||||||||||||    
T  4002 aactagatcgccgacccgtgcgccgcacgggtcttatgagc 3962  T

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Target: scaffold0188 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 88
Target Start/End: Original strand, 28312 - 28345
Alignment:
Q  55 actagaacgccgacccgtgcgccgcatgggtctt 88  Q
    |||||||||||||||||||||||||| |||||||    
T  28312 actagaacgccgacccgtgcgccgcacgggtctt 28345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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