View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16780_high_4 (Length: 636)
Name: NF16780_high_4
Description: NF16780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16780_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 596; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 19 - 626
Target Start/End: Original strand, 33387647 - 33388254
Alignment:
| Q |
19 |
atatctgtcacagtacgtatgaaattgtcactcgtaaaaacatattcattatagataacccactcgggcttgtggtccaggcaatttgatggatgcaatt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
33387647 |
atatctgtcacagtacgtatgaaattgtcactcgtaaaaacatattcattatagataacccactcgggcttggggtccaggcaatttgatggatgcaatt |
33387746 |
T |
|
| Q |
119 |
gtaccatctggttatctttcactgtcaagtagtgtcctgtccgctcaagatgagccacctgcatgaagtatcctgctagcattgcctttttaatgttgac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33387747 |
gtaccatctggttatctttcactgtcaagtagtgtcctgtccgctcaagatgagccacctgcatgaagtatcctgctagcattgcctttttaatgttgac |
33387846 |
T |
|
| Q |
219 |
atagtagtcgcgactattgaagtaagtgctgcataacttcaggttaaaccgagccatgattcgcactagctgttgtcgaacattatcagctgatttcagc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33387847 |
atagtagtcgcgactattgaagtaagtgctgcataacttcaggttaaaccgagccatgattcgcactagctgttgtcgaacattatcagctgatttcagc |
33387946 |
T |
|
| Q |
319 |
gccctgtgattaacaaagttttcatagcaccaagatggatcctcattgttttgcttgtaggcatggtatacgttcaatagtgtgagatgatctccatcaa |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33387947 |
gccctgtgattaacaaagttttcatagcaccaagatggatcctcattgttttgcttgtaggcatggtatacgttcaatagtgtgagatgatctccatcaa |
33388046 |
T |
|
| Q |
419 |
tgtgtgcaaacctagcttttgcttcatctgcagcttcttgtgcatccctaggccgaataaagcaattgggtaccgataccatcgcagatattgaaagaat |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
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|
| T |
33388047 |
tgtgtgcaaacctagcttttgcttcatctgcagcttcttgtgcatccctaggccgaataaagcaattgggtaccgctaccatcgcagaaattgaaagaat |
33388146 |
T |
|
| Q |
519 |
ctcgtttgaacagttgaactctggactaacaataagcatctttgacatctgagggtccaatggaaactcactcataatctcacccagctttgttaagtta |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33388147 |
ctcgtttgaacagttgaactctggactaacaataagcatctttgacatctgagggtccaatggaaactcactcataatctcacccagctttgttaagtta |
33388246 |
T |
|
| Q |
619 |
ccttcatc |
626 |
Q |
| |
|
|||||||| |
|
|
| T |
33388247 |
ccttcatc |
33388254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 26 - 626
Target Start/End: Complemental strand, 20817453 - 20816850
Alignment:
| Q |
26 |
tcacagtacgtatgaaattgtcactcgtaaaaacatattcattatagataacccactcgggcttgtggtccaggcaatttgatggatgcaattgtaccat |
125 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| | ||| |
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|
| T |
20817453 |
tcacagtacgtatgaaatgacgactcgtaagaacatattcattatagataacccattcaggcttgtggtccaggcaatttgatggatgcaagtatacttc |
20817354 |
T |
|
| Q |
126 |
ctggttatctttcactgtcaagtagtgtcctgtccgct---caagatgagccacctgcatgaagtatcctgctagcattgcctttttaatgttgacatag |
222 |
Q |
| |
|
||| || ||||| |||||||||||| ||||| || ||| ||| |||||||||||||||||| |||||||||||||||| |||| | |||||||| ||| |
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|
| T |
20817353 |
ctgcttgtctttaactgtcaagtagcgtcctctctgctgatcaaaatgagccacctgcatgaaatatcctgctagcattgtctttcttatgttgacgtag |
20817254 |
T |
|
| Q |
223 |
tagtcgcgactattgaagtaagtgctgcataacttcaggttaaaccgagccatgattcgcactagctgttgtcgaacattatcagctgatttcagcgccc |
322 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||| |
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|
| T |
20817253 |
tagtggcgactattgaagtcagtgctgcataacttcagattaaaccgagccatgatacgcactagctgttgtcgaacattatcagctgatttcaacaccc |
20817154 |
T |
|
| Q |
323 |
tgtgattaacaaagttttcatagcaccaagatggatcctcattgttttgcttgtaggcatggtatacgttcaatagtgtgagatgatctccatcaatgtg |
422 |
Q |
| |
|
| | ||||| |||||| || ||||||||||| | |||||| |||||||||||||||||||| ||||| ||||| |||||||||||||||||||||| ||| |
|
|
| T |
20817153 |
tataattaataaagttgtcgtagcaccaagaagcatcctcgttgttttgcttgtaggcatgatatacattcaagagtgtgagatgatctccatcaacgtg |
20817054 |
T |
|
| Q |
423 |
tgcaaacctagcttttgcttcatctgcagcttcttgtgcatccctaggccgaataaagcaattgggtaccgataccatcgcagatattgaaagaatctcg |
522 |
Q |
| |
|
| |||||||||||| |||||||| |||||| |||||| ||| ||||||| ||||||||||||||||| || | ||||||||| ||||| |||||||| |
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|
| T |
20817053 |
tataaacctagctttcgcttcatccgcagctatttgtgcctccttaggccggataaagcaattgggtactgacagcatcgcagaaattgacagaatctca |
20816954 |
T |
|
| Q |
523 |
tttgaacagttgaactctggactaacaataagcatctttgacatctgagggtccaatggaaactcactcataatctcacccagctttgttaagttacctt |
622 |
Q |
| |
|
||||||||||||||||| || ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
20816953 |
tttgaacagttgaactcagggctaacaacaagcatctttgacatctgagggtccaacggaaactcactcataatcttacccaactttgttaagttacctt |
20816854 |
T |
|
| Q |
623 |
catc |
626 |
Q |
| |
|
|||| |
|
|
| T |
20816853 |
catc |
20816850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 165; Significance: 6e-88; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 126 - 362
Target Start/End: Original strand, 38778277 - 38778513
Alignment:
| Q |
126 |
ctggttatctttcactgtcaagtagtgtcctgtccgctcaagatgagccacctgcatgaagtatcctgctagcattgcctttttaatgttgacatagtag |
225 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| | |||||||| |||||| |
|
|
| T |
38778277 |
ctggttgtctttaactgtcaagtagtgtcctgtccgctcaagatgagccacctgcatgaaatatcctgctaacattgcctttcttatgttgacgtagtag |
38778376 |
T |
|
| Q |
226 |
tcgcgactattgaagtaagtgctgcataacttcaggttaaaccgagccatgattcgcactagctgttgtcgaacattatcagctgatttcagcgccctgt |
325 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||| | |
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|
| T |
38778377 |
tcgcgactattgaagtcagtgctgcataacttcaggttaaacctagccatgatacgcactagctgttgtcgaacattatcagctgatttaagcgccctat |
38778476 |
T |
|
| Q |
326 |
gattaacaaagttttcatagcaccaagatggatcctc |
362 |
Q |
| |
|
|||||| ||||| || ||||||||||| | |||||| |
|
|
| T |
38778477 |
tattaacgaagttgtcgtagcaccaagaagcatcctc |
38778513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 498 - 626
Target Start/End: Original strand, 38779167 - 38779295
Alignment:
| Q |
498 |
catcgcagatattgaaagaatctcgtttgaacagttgaactctggactaacaataagcatctttgacatctgagggtccaatggaaactcactcataatc |
597 |
Q |
| |
|
||||||||| |||||||||||||| || |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38779167 |
catcgcagaaattgaaagaatctcattcgaacagttgaactcaggactaacaacaagcatctttgacatctgagggtccaatggaaactcactcataatc |
38779266 |
T |
|
| Q |
598 |
tcacccagctttgttaagttaccttcatc |
626 |
Q |
| |
|
||||| ||||||||||||||||||||||| |
|
|
| T |
38779267 |
tcaccaagctttgttaagttaccttcatc |
38779295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 365 - 491
Target Start/End: Original strand, 38778622 - 38778748
Alignment:
| Q |
365 |
tgttttgcttgtaggcatggtatacgttcaatagtgtgagatgatctccatcaatgtgtgcaaacctagcttttgcttcatctgcagcttcttgtgcatc |
464 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||| |||||| || |
|
|
| T |
38778622 |
tgttttgcttgtaggcatggtatacattcaagagtgtgagatgatctccatcaatgtgtccaaacctagctttggcttcatccgcagctttttgtgcctc |
38778721 |
T |
|
| Q |
465 |
cctaggccgaataaagcaattgggtac |
491 |
Q |
| |
|
||||||||| ||||||||||||||||| |
|
|
| T |
38778722 |
cctaggccggataaagcaattgggtac |
38778748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 38778059 - 38778164
Alignment:
| Q |
19 |
atatctgtcacagtacgtatgaaattgtcactcgtaaaaacatattcattatagataacccactcgggcttgtggtccaggcaatttgatggatgcaatt |
118 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
38778059 |
atatctgtcacagtacgtatgaaattccgactcgtaagaacatattcattgtagataacccactcgggcttgtggtccagacaatttgatggatgcaagt |
38778158 |
T |
|
| Q |
119 |
gtacca |
124 |
Q |
| |
|
|||||| |
|
|
| T |
38778159 |
gtacca |
38778164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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