View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16780_high_44 (Length: 282)
Name: NF16780_high_44
Description: NF16780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16780_high_44 |
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Alignment Details
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 123 - 267
Target Start/End: Original strand, 39359893 - 39360037
Alignment:
| Q |
123 |
taaattttcaacacattatttcctttgaccaatgttgtataaataaacaatacacacgaggatttacgtatccaatcaaaaaagttagcaataatgaatc |
222 |
Q |
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| T |
39359893 |
taaattttcaacacattatttcctttgaccaatgttgtataaataaacaatacacacgaggatttacgtatccaatcaaaaaagttagcaataatgaatc |
39359992 |
T |
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| Q |
223 |
agatgaagtggtgcgaattagaagcaacaagattaaggtgcaaag |
267 |
Q |
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| T |
39359993 |
agatgaagtggtgcgaattagaagcaacaagattaaggtgcaaag |
39360037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 39359800 - 39359907
Alignment:
| Q |
1 |
aataatcatttagtttaatgatattaaacgcagcaatattagaaaaacaggaaccttcgaggttgtcgtactttgtattattgttgcattttataaattt |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39359800 |
aataataatttagtttaatgatattaaacgcagcaatattagaaaaacaggaaccttcgaggttgtcgtactttgtattattgttgcattttataaattt |
39359899 |
T |
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| Q |
101 |
tcaacaca |
108 |
Q |
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|||||||| |
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| T |
39359900 |
tcaacaca |
39359907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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