View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16780_high_5 (Length: 590)
Name: NF16780_high_5
Description: NF16780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16780_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 469; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 18 - 572
Target Start/End: Original strand, 43988430 - 43988982
Alignment:
| Q |
18 |
atgctaagattataaatatttcataatcgtctttgattcttaaatgttacatctatcaactcttgctttctgacgccgttgcaagtggtatgtagccagt |
117 |
Q |
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| T |
43988430 |
atgctaagattataaatatttcataatcgtctttgattcttaaatgttacatctatcaactcttgctttctgacgccgttgcaagtggtatgtagcctgt |
43988529 |
T |
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| Q |
118 |
taaatgtcatgtggatgtcattgagtcggataccgaggttggnnnnnnnaaatgtcgtaagtatccaataattatannnnnnncaaggaaagctcatctc |
217 |
Q |
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| T |
43988530 |
taaatgtcatgtggatgtcattgagtcggataccgagttt----tttttaaatgtcgtaagtatccaataattatatttttttcaaggaaagctcatctc |
43988625 |
T |
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| Q |
218 |
tcttttctataatatctcaatcttcttctccaatctcctccgccactcatttcaatgttcttcaccgtttgctcccctcttttgaaacaactagaaacct |
317 |
Q |
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| T |
43988626 |
tcttttctataatatctcaatcttcttctccaatctcctccgccactcatttcaatgttcttcaccgtttgctcccctcttttgaaacaactagaaacct |
43988725 |
T |
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| Q |
318 |
aaataacctaaacagtgtgtacatttgacgacaaagaatatgttcaaatttatagggtattgtagtcgaatttaaaatgttaagattttgtgcatctttg |
417 |
Q |
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| T |
43988726 |
aaataacctaaacagtgtgtacatttgatgacaaagaatatgttcaaatttatagggtattgtagtcgaatttaaaatgttaagattttgtgcatctttg |
43988825 |
T |
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| Q |
418 |
atgagtatagttttgttaatttatatgttatttttagatgtaagttgggaggataggaagacaatcttgtattgattatgttggaacagatgaaaatgta |
517 |
Q |
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| T |
43988826 |
atgagtatagttttgttaatttatttgttatttttagatgtaagttgtgaggataggaagacaatcttgtattgattatgttggaacagatgaaaatgta |
43988925 |
T |
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| Q |
518 |
atctatttaac--agagtgtatattttttctaattttctggttcatcatggtttatc |
572 |
Q |
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| T |
43988926 |
atctagttaacagagagtgtatattttttctaattttctggttcatcatggtttatc |
43988982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 357 - 452
Target Start/End: Original strand, 43976040 - 43976134
Alignment:
| Q |
357 |
atgttcaaatttatagggtattgtagtcgaatttaaaatgttaagattttgtgcatctttgatgagtatagttttgttaatttatatgttattttt |
452 |
Q |
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||||||||||||| ||||||||||| | |||||| |||||||| ||||||||| ||||||||| | |||||| |||||| |||||||||||| |
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| T |
43976040 |
atgttcaaatttaaagggtattgtatttgaatttgggatgttaag-ttttgtgcaactttgatgaatttagtttaattaattattatgttattttt |
43976134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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