View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16780_high_51 (Length: 254)
Name: NF16780_high_51
Description: NF16780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16780_high_51 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 15 - 240
Target Start/End: Complemental strand, 43049335 - 43049110
Alignment:
| Q |
15 |
gagtgatgaagtttatgatatctatgtgaggctttactttaggattaggttcagacttggggatttgatatctggtgattacaagcctaaggtgaaatgt |
114 |
Q |
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| T |
43049335 |
gagtgatgaagtttatgatatctatgtgaggctttactttaggattaggttcagacttggggatttgatatcgggtgattacaagcctaaggtgaaatgt |
43049236 |
T |
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| Q |
115 |
gacctcaaagttcctttgagttctaaaattagcaatgcaacattcactaggaccaagtgtgatgttgatttctactaatgtcagcatctgatcgttttct |
214 |
Q |
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| T |
43049235 |
gacttcaaagttcctttgagttctaaaattagcaatgcaacattcactaggaccaagtgtgatgttgatttctactaatgtcagcatctgatcgttttct |
43049136 |
T |
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| Q |
215 |
tggcacaacagtattcatagggattt |
240 |
Q |
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| T |
43049135 |
tggcacaacagtattcataaggattt |
43049110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 133
Target Start/End: Complemental strand, 43062120 - 43062002
Alignment:
| Q |
15 |
gagtgatgaagtttatgatatctatgtgaggctttactttaggattaggttcagacttggggatttgatatctggtgattacaagcctaaggtgaaatgt |
114 |
Q |
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||||| || |||||||| ||||||||||| ||| ||||| ||||||||||||| |||||| || | ||||||| | |||||||||||||| |||||| |
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| T |
43062120 |
gagtgttggagtttatggtatctatgtgaagctctacttcaggattaggttcaaacttggagactcgatatctcgcacatacaagcctaaggtcaaatgt |
43062021 |
T |
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| Q |
115 |
gacctcaaagttcctttga |
133 |
Q |
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| T |
43062020 |
gacctcaaagttccattga |
43062002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 140
Target Start/End: Complemental strand, 43024184 - 43024059
Alignment:
| Q |
15 |
gagtgatgaagtttatgatatctatgtgaggctttactttaggattaggttcagacttggggatttgatatctggtgattacaagcctaaggtgaaatgt |
114 |
Q |
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||||| ||||||||||||||||||||||| || ||||| ||||| |||||||| ||| || |||||| |||| | ||| || || ||||||||| |
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| T |
43024184 |
gagtgttgaagtttatgatatctatgtgaaactctacttcgaaattagattcagactcgggaatgtgatatttggtcgtatcaatccgaaagtgaaatgt |
43024085 |
T |
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| Q |
115 |
gacctcaaagttcctttgagttctaa |
140 |
Q |
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| T |
43024084 |
gacctcaaagttcctttgaattctaa |
43024059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 134
Target Start/End: Complemental strand, 43054860 - 43054750
Alignment:
| Q |
24 |
agtttatgatatctatgtgaggctttactttaggattaggttcagacttggggatttgatatctggtgattacaagcctaaggtgaaatgtgacctcaaa |
123 |
Q |
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|||||||||||||||||||| ||| ||||||||||||||||| | |||||| || | ||||| | | | ||| |||||||| ||||| ||||||| | |
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| T |
43054860 |
agtttatgatatctatgtgaagctctactttaggattaggtttaaacttggagactccatatccagaaagttcaaacctaaggtcaaatgcgacctcaca |
43054761 |
T |
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| Q |
124 |
gttcctttgag |
134 |
Q |
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| T |
43054760 |
gttcctttgag |
43054750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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