View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16780_high_55 (Length: 250)
Name: NF16780_high_55
Description: NF16780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16780_high_55 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 4274839 - 4274621
Alignment:
| Q |
1 |
ctttttagcaatgccaaagttactcaacaaaacctcacaaactgtgaaaaaatgcagtcatgaaatcagtctttgaaaaaataatcttcacaaaaacaac |
100 |
Q |
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| T |
4274839 |
ctttttagcaatgccaaagttactcaacaaaacctcacaaactgtgaaaaaatgcagtcatgaaatcagtctttgaaaaaataatcttcacaaaaacaac |
4274740 |
T |
|
| Q |
101 |
tatagaacttcttcatagttcatacccacttgttaacattgctaaaaatagaaactttctcacatggggttaatcgatctcaacactacagaggatgatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4274739 |
tatagaacttcttcatagttcatacccacttgttaacattgctaaaaaaagaaactttctcacatggggttaatcgatctcaacactacagaggatgatg |
4274640 |
T |
|
| Q |
201 |
aaacaccatattcagctat |
219 |
Q |
| |
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||||||||||||||||||| |
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| T |
4274639 |
aaacaccatattcagctat |
4274621 |
T |
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