View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16780_high_64 (Length: 238)
Name: NF16780_high_64
Description: NF16780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16780_high_64 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 44672564 - 44672785
Alignment:
| Q |
1 |
tgaaattcaatttaacgtaggaggtacaagattcattgtaacacaaggaacaatgaaaaaacaagtgaaactgaaatagtaaagtaaaggtgtaaagaac |
100 |
Q |
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| T |
44672564 |
tgaaattcaatttaacgtaggaggtacaagattcattgtaacacaaggaacaatgaaaaaacaagtgaaactgaaatagtaaagtaaaggtgtaaagaac |
44672663 |
T |
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| Q |
101 |
aaatatagaatgtgtggggcgagctaacagtttaccgaagtccgagattttttacagtaggaacgtttcagatgagttgaaaaacagtattactaatata |
200 |
Q |
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| T |
44672664 |
aaatatagaatgtgcggggcgagctaacagtttaccgaagttcgagattttttacagtaggaacgtttcagatgagttgaaaaacagtattgctaatata |
44672763 |
T |
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| Q |
201 |
ttgggggttcgtgcagtgttag |
222 |
Q |
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||||| |||||||||||||||| |
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| T |
44672764 |
ttgggcgttcgtgcagtgttag |
44672785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 26401699 - 26401763
Alignment:
| Q |
129 |
agtttaccgaagtccgagattttttacagtaggaacgtttcagatgagttgaaaaacagtattac |
193 |
Q |
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|||||||||||||| || ||||| ||||||||||| || |||||| |||||||||||||||||| |
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| T |
26401699 |
agtttaccgaagtcagaaattttctacagtaggaatgtgccagatgcgttgaaaaacagtattac |
26401763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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