View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16780_high_71 (Length: 220)
Name: NF16780_high_71
Description: NF16780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16780_high_71 |
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| [»] chr1 (8 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 2 - 220
Target Start/End: Original strand, 27409656 - 27409874
Alignment:
| Q |
2 |
agagcaagtgaaagtgctgctattatcatcgtaagcatagctataggcatcaggacattggttctcaaaaaccattgatgaatttgtaggtggacatgtc |
101 |
Q |
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||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||| |
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| T |
27409656 |
agagcaagtgaaagtgctgctcgtattatcgtaagcatagctataggcatcaggacattggttcttgaaaaccatagagtaatttgtaggtggacatgtc |
27409755 |
T |
|
| Q |
102 |
gcttcggtattgtaacttccacgacaacaatattgatctgtattaaaagccaagcaagcactcttacaagcaatgacactcccatcagaaccttttactt |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
27409756 |
gcttcggtattgtaacttccacgacaacaatattgatctgtattaaaagccaagcaagcactcttacaagcaacgacactcccatcagaaccttttactt |
27409855 |
T |
|
| Q |
202 |
gaagttctgcgggacacac |
220 |
Q |
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||||||||||||||||||| |
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| T |
27409856 |
gaagttctgcgggacacac |
27409874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 3 - 220
Target Start/End: Original strand, 27388701 - 27388918
Alignment:
| Q |
3 |
gagcaagtgaaagtgctgctattatcatcgtaagcatagctataggcatcaggacattggttctcaaaaaccattgatgaatttgtaggtggacatgtcg |
102 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| || || ||||||||||||||||| | | || | ||||| ||||||||||| | |
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| T |
27388701 |
gagcaagtgaaagtgctgctcttatcatcgtaagcatagctataagcttctggacattggttctcaaatatctcggagtagtttgtgggtggacatgttg |
27388800 |
T |
|
| Q |
103 |
cttcggtattgtaacttccacgacaacaatattgatctgtattaaaagccaagcaagcactcttacaagcaatgacactcccatcagaaccttttacttg |
202 |
Q |
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| T |
27388801 |
cctcggtgttgaaacttccacgacaacaatattgatcggtattaaaagccaaacaagcactcttacaagcaacgacacttccatcagaaccttttaattg |
27388900 |
T |
|
| Q |
203 |
aagttctgcgggacacac |
220 |
Q |
| |
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||| || ||||||||||| |
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| T |
27388901 |
aagctccgcgggacacac |
27388918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 2 - 208
Target Start/End: Complemental strand, 27416406 - 27416200
Alignment:
| Q |
2 |
agagcaagtgaaagtgctgctattatcatcgtaagcatagctataggcatcaggacattggttctcaaaaaccattgatgaatttgtaggtggacatgtc |
101 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| || ||| ||| ||| | ||||| |
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| T |
27416406 |
agagcaagtgaaagtgctgctattatcatcgtaagcatagctataagcatcaggacattggttctcaaaaaacatggagtaatctgtgggtaggcatgta |
27416307 |
T |
|
| Q |
102 |
gcttcggtattgtaacttccacgacaacaatattgatctgtattaaaagccaagcaagcactcttacaagcaatgacactcccatcagaaccttttactt |
201 |
Q |
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| ||||| ||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| | ||||||||| |||||| |
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| T |
27416306 |
ccctcggtgatgtaatctccacgacaacaatattgatatgtattaaaagccatgcaagcactcttacaagcaatgacacccaagtcagaacctgttactt |
27416207 |
T |
|
| Q |
202 |
gaagttc |
208 |
Q |
| |
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||||||| |
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| T |
27416206 |
gaagttc |
27416200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 4 - 194
Target Start/End: Original strand, 27432488 - 27432678
Alignment:
| Q |
4 |
agcaagtgaaagtgctgctattatcatcgtaagcatagctataggcatcaggacattggttctcaaaaaccattgatgaatttgtaggtggacatgtcgc |
103 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||| ||| | || |||||||||| |||||||| || | | ||| ||||||||| | | |
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| T |
27432488 |
agcaagtgaaagtgctgctcttatcgtcgtaagcatagctataagcacccgggcattggttcttgaaaaccatagagtagtctgtgggtggacatttttc |
27432587 |
T |
|
| Q |
104 |
ttcggtattgtaacttccacgacaacaatattgatctgtattaaaagccaagcaagcactcttacaagcaatgacactcccatcagaacct |
194 |
Q |
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||||||||||||| ||||||||||||||||| |||| || |||||||| ||||| ||||||||||||| |||||||||||||||||| |
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| T |
27432588 |
ttcggtattgtaatctccacgacaacaatatttatcttcgtttaaagccaaacaagcgctcttacaagcaaccacactcccatcagaacct |
27432678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 4 - 220
Target Start/End: Original strand, 27214779 - 27214995
Alignment:
| Q |
4 |
agcaagtgaaagtgctgctattatcatcgtaagcatagctataggcatcaggacattggttctcaaaaaccattgatgaatttgtaggtggacatgtcgc |
103 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||| ||| | || || ||||||| |||||||| || | | ||| ||||||||| | | |
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| T |
27214779 |
agcaagtgaaagtgctgctcttatcgtcgtaagcatagctataagcacccgggcactggttcttgaaaaccatagaatagtctgtgggtggacatttttc |
27214878 |
T |
|
| Q |
104 |
ttcggtattgtaacttccacgacaacaatattgatctgtattaaaagccaagcaagcactcttacaagcaatgacactcccatcagaaccttttacttga |
203 |
Q |
| |
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||||||||||||| ||||||||||||||||| |||| ||| |||||||| ||||| ||||||||||||| ||||||||||||| |||| | ||||| |
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| T |
27214879 |
ttcggtattgtaatctccacgacaacaatatttatcttcatttaaagccaaacaagcgctcttacaagcaaccacactcccatcagtacctatcacttgg |
27214978 |
T |
|
| Q |
204 |
agttctgcgggacacac |
220 |
Q |
| |
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|| |||| |||||||| |
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| T |
27214979 |
agctctgaaggacacac |
27214995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 4 - 220
Target Start/End: Complemental strand, 27444122 - 27443906
Alignment:
| Q |
4 |
agcaagtgaaagtgctgctattatcatcgtaagcatagctataggcatcaggacattggttctcaaaaaccattgatgaatttgtaggtggacatgtcgc |
103 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||| ||| | || || ||||||| |||||||| || | | ||| ||||||||| | | |
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| T |
27444122 |
agcaagtgaaagtgctgctcttatcgtcgtaagcatagctataagcacccgggcactggttcttgaaaaccatagaatagtctgtgggtggacatttttc |
27444023 |
T |
|
| Q |
104 |
ttcggtattgtaacttccacgacaacaatattgatctgtattaaaagccaagcaagcactcttacaagcaatgacactcccatcagaaccttttacttga |
203 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||| ||| |||||||| ||||| ||||||||||||| ||||||||||||| |||| | ||||| |
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|
| T |
27444022 |
ttcggtattgtaatctccacgacaacaatatttatcttcatttaaagccaaacaagcgctcttacaagcaaccacactcccatcagtacctatcacttgg |
27443923 |
T |
|
| Q |
204 |
agttctgcgggacacac |
220 |
Q |
| |
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|| |||| |||||||| |
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| T |
27443922 |
agctctgaaggacacac |
27443906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 4 - 189
Target Start/End: Original strand, 27220741 - 27220926
Alignment:
| Q |
4 |
agcaagtgaaagtgctgctattatcatcgtaagcatagctataggcatcaggacattggttctcaaaaaccattgatgaatttgtaggtggacatgtcgc |
103 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||| ||| | || |||||||||| |||| ||| || | ||||| ||||||||| | | |
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|
| T |
27220741 |
agcaagtgaaagtgctgctcttatcgtcgtaagcatagctataagcaccggggcattggttcttgaaaatcatagagtagtttgtgggtggacatttttc |
27220840 |
T |
|
| Q |
104 |
ttcggtattgtaacttccacgacaacaatattgatctgtattaaaagccaagcaagcactcttacaagcaatgacactcccatcag |
189 |
Q |
| |
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||| |||||| || ||||||||||||||||| |||| ||| |||||||| |||||||||||||| ||||| ||||||||||||| |
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|
| T |
27220841 |
ttcagtattgaaatctccacgacaacaatatttatcttcatttaaagccaaacaagcactcttacaggcaatcacactcccatcag |
27220926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 90 - 193
Target Start/End: Original strand, 27207494 - 27207597
Alignment:
| Q |
90 |
ggtggacatgtcgcttcggtattgtaacttccacgacaacaatattgatctgtattaaaagccaagcaagcactcttacaagcaatgacactcccatcag |
189 |
Q |
| |
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||||||||| | |||| |||||| || ||||||||||||||||| |||| || |||||||| ||||| ||||||||||||| ||||||||||||| |
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| T |
27207494 |
ggtggacatttttcttcagtattgaaatctccacgacaacaatatttatcttcctttaaagccaaacaagcgctcttacaagcaaacacactcccatcag |
27207593 |
T |
|
| Q |
190 |
aacc |
193 |
Q |
| |
|
|||| |
|
|
| T |
27207594 |
aacc |
27207597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 41458176 - 41458108
Alignment:
| Q |
4 |
agcaagtgaaagtgctgctattatcatcgtaagcatagctataggcatcaggacattggttctcaaaaa |
72 |
Q |
| |
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||||||| ||||| || || |||||||| |||||||||||||| || | ||||||||| || ||||||| |
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|
| T |
41458176 |
agcaagtaaaagtactacttttatcatcataagcatagctataagcttgaggacattgcttttcaaaaa |
41458108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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