View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16780_high_73 (Length: 215)
Name: NF16780_high_73
Description: NF16780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16780_high_73 |
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Alignment Details
Target: chr1 (Bit Score: 65; Significance: 9e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 134 - 198
Target Start/End: Complemental strand, 8012395 - 8012331
Alignment:
| Q |
134 |
cttgatattattcttctccctcaataatcaaaacacatgaaaataatgacaatggtggaagcata |
198 |
Q |
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| T |
8012395 |
cttgatattattcttctccctcaataatcaaaacacatgaaaataatgacaatggtggaagcata |
8012331 |
T |
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Target: chr1; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 8012749 - 8012695
Alignment:
| Q |
1 |
aaaactcgtgatttatggaggcgcaaaaagcatattcgcttcttcatgaatacta |
55 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8012749 |
aaaactcgtgatttatggaggcgcaaaaagcatattcgcttcttcatgaatacta |
8012695 |
T |
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