View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16780_low_1 (Length: 728)
Name: NF16780_low_1
Description: NF16780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16780_low_1 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 602; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 602; E-Value: 0
Query Start/End: Original strand, 18 - 716
Target Start/End: Original strand, 4921619 - 4922318
Alignment:
| Q |
18 |
aatatagtgtacaaaggttatgtcaaatataatggtgaaaatgattatccaatagcattgttgcggataacaaatacattcatgaaagaatcgttcaaga |
117 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||| ||||||||| |
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|
| T |
4921619 |
aatatagtctacaaaggctatgtcaaatataatggtgaaaatgattatccaatagcattgttgcggataaaagatacatacatgaaagaaacgttcaaga |
4921718 |
T |
|
| Q |
118 |
atgaaattgaactccactgccagctttctcacccaaatttgatatctttgataggattttgtgaccnnnnnnntgagaaaattctcgtgtataaaaaaga |
217 |
Q |
| |
|
||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
4921719 |
atgaaattgaactccactgccagatttgtcatccaaatttgatatctttgataggattttgtgaccaaaaaaatgagaaaattctcgtgtataaaaaaga |
4921818 |
T |
|
| Q |
218 |
tgaaatggtcaatggctctctccgtgatcacttatgttcaagggacacggtttcactctcttggnnnnnnn-ggcttgaaatatgcattggagctgcaaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
4921819 |
tgaaatggtcaatggctctctccgtgatcacttatgttcaagggacacggtttcactctcttggaaaaaaaaggcttgaaatatgcattggagctgcaaa |
4921918 |
T |
|
| Q |
317 |
aggactacactaccttcacactggagcaaagcgcccgattttccaccgtgacgtaaagccttacagcattcttttggataacaatatggcaccaaaactc |
416 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4921919 |
aggactgcactaccttcacactggagcaaagcgcccgattttccaccgtgacgtaaagccttacagcattcttttggataacaatatggcaccaaaactc |
4922018 |
T |
|
| Q |
417 |
tcgcaatttggattatccttacaagggaagctttcaaaatcggagtcaaaaccaattgaagtcaacacgatttgtggtaaagtgttaaattttattaaac |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
4922019 |
tcgcaatttggattatccttacaagggaagctttcaaaatcggagtcaaaaccaattgaagtcaacgcgatttgtggtaaagtgttaaattttattaaac |
4922118 |
T |
|
| Q |
517 |
tatttttatggtgcattcttatttatccatcaacaataggaaggcaaataaattatttttattaatgtcaattttgatgggtaacctctacacaccttac |
616 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4922119 |
tatttttatggtgcattcttatttatccatcaataataggaaggcaaataaattatttttattaatgtcaattttgatgggtaacctctacacaccttac |
4922218 |
T |
|
| Q |
617 |
cttttgtcgatgagtattttctagggatcgcctaaaatgtccaattctcgattcccttgcctctctttatgttcttcttgccttttatttcttttgccta |
716 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4922219 |
cttttgtcgatgagtattttctagggatcgcctaaaatgtccaattctcgattcccttgcctctctttatgttcttcttgccttttatttcttttgccta |
4922318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 19 - 479
Target Start/End: Original strand, 4927862 - 4928322
Alignment:
| Q |
19 |
atatagtgtacaaaggttatgtcaaatataatggtgaaaatgattatccaatagcattgttgcggataacaaatacattcatgaaagaatcgttcaagaa |
118 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| | | | || |||||||| |
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|
| T |
4927862 |
atatagtctacaaaggctatgtcaaatataatggtgaaaatgattatccaatagcattgttgcggataacagatgtatttaggggacaaggtttcaagaa |
4927961 |
T |
|
| Q |
119 |
tgaaattgaactccactgccagctttctcacccaaatttgatatctttgataggattttgtgaccnnnnnnntgagaaaattctcgtgtataaaaaagat |
218 |
Q |
| |
|
|||||| |||| || ||||||||||| ||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||| |
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|
| T |
4927962 |
tgaaatagaacacctctgccagctttgtcacccaaatttgatatcttttataggattttgtgaccaaaaaaataagaaaattctcgtgtataaaaaagat |
4928061 |
T |
|
| Q |
219 |
gaaatggtcaatggctctctccgtgatcacttatgttcaagggacacggtttcactctcttggnnnnnnnggcttgaaatatgcattggagctgcaaaag |
318 |
Q |
| |
|
||||||||||||||| |||||| ||||||||| |||| ||||| | || |||||||| ||| |||||||||||||||||||||||||||||| |
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|
| T |
4928062 |
gaaatggtcaatggcactctccaagatcacttaggttcgagggatatggaatcactctcgtggaagaaaaggcttgaaatatgcattggagctgcaaaag |
4928161 |
T |
|
| Q |
319 |
gactacactaccttcacactggagcaaagcgcccgattttccaccgtgacgtaaagccttacagcattcttttggataacaatatggcaccaaaactctc |
418 |
Q |
| |
|
|||||||||| |||||||||||| ||||||| |||||||||||||||||||||| || | | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4928162 |
gactacactatcttcacactggaacaaagcgtccgattttccaccgtgacgtaattccacagaacattcttttggataacaatatggcaccaaaactctc |
4928261 |
T |
|
| Q |
419 |
gcaatttggattatccttacaagggaagctttcaaaatcggagtcaaaaccaattgaagtc |
479 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||| |
|
|
| T |
4928262 |
gcaatttggattatccttacaagggaagctttctaaatcggagtcaataccaattgtagtc |
4928322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 27 - 483
Target Start/End: Complemental strand, 4908340 - 4907890
Alignment:
| Q |
27 |
tacaaaggttatgtcaaatataatggtgaaaatgattatccaatagcattgttgcggataacaaatacattca-tgaaagaatcgttcaagaatgaaatt |
125 |
Q |
| |
|
|||||||||||| ||||| |||||||||||| |||||||||||||||| || ||||| | | ||| ||| | |||| | | ||||||||| |||||| |
|
|
| T |
4908340 |
tacaaaggttatctcaaacataatggtgaaactgattatccaatagcagtgaaacggatgatacatatatttaatgaatggaa-gttcaagaaggaaatt |
4908242 |
T |
|
| Q |
126 |
gaactccactgccagctttctcacccaaatttgatatctttgataggattttgtgaccnnnnnnntgagaaaattctcgtgtataaaaaagatgaaatgg |
225 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||| ||||| |||||||| ||||||| |||||||||||| |||||| || | ||| |
|
|
| T |
4908241 |
gaactcaactgccagcttcatcacccaaatttgacgtcttttataggattctgtgaccacaagtatgagaaaattcttgtgtat------gagtacatgt |
4908148 |
T |
|
| Q |
226 |
tcaatggctctctccgtgatcacttatgttcaagggacacggtttcactctcttggnnnnnnnggcttgaaatatgcattggagctgcaaaaggactaca |
325 |
Q |
| |
|
||||||||||||| ||||||| || || ||||| | || ||| | || ||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4908147 |
ccaatggctctctctatgatcacctacttttgagggatatggaatcattgtcatggaagaaaaggctagaaatatgcattggagctgcaaaaggactaca |
4908048 |
T |
|
| Q |
326 |
ctaccttcacactggagcaaagcgcccgattttccaccgtgacgtaaagccttacagcattcttttggataacaatatggcaccaaaactctcgcaattt |
425 |
Q |
| |
|
||||||||||||||||||||||||| | ||||| ||| ||||| |||||||| | | ||||||||| ||||| ||||||| ||||||||||||||| || |
|
|
| T |
4908047 |
ctaccttcacactggagcaaagcgcgcaatttttcactgtgacataaagcctcaaaccattcttttagataagaatatggtaccaaaactctcgcatctt |
4907948 |
T |
|
| Q |
426 |
ggattatccttacaagggaagctttcaaaatcggagtcaaaaccaattgaagtcaaca |
483 |
Q |
| |
|
||||| |||||||||||||||||| | || || || |||||||| |||||||||||| |
|
|
| T |
4907947 |
ggattttccttacaagggaagcttcctaactctaagccaaaaccagttgaagtcaaca |
4907890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 20 - 457
Target Start/End: Complemental strand, 4904423 - 4903992
Alignment:
| Q |
20 |
tatagtgtacaaaggttatgtcaaatataatggtgaaaatgattatccaatagcattgttgcggataacaaatacattcat-gaaagaatcgttcaagaa |
118 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||| |||||| |||||||| | |||| ||| || ||| || | || ||||||||| |
|
|
| T |
4904423 |
tatagtgtacaaaggttatctcaaacataatggtgaaaatgagtatccagtagcattggagaggatgacacttagattgggcgattggat-gttcaagaa |
4904325 |
T |
|
| Q |
119 |
tgaaattgaactccactgccagctttctcacccaaatttgatatctttgataggattttgtgaccnnnnnnntgagaaaattctcgtgtataaaaaagat |
218 |
Q |
| |
|
| ||||||||||||| |||| ||| |||||| |||||||||||||| |||||||| || ||| |||||||||| | |||||| || |
|
|
| T |
4904324 |
ggtaattgaactccacagccaacttcatcaccctaatttgatatctttaataggattctgcgacgagaaagatgagaaaattatagtgtat------gag |
4904231 |
T |
|
| Q |
219 |
gaaatggtcaatggctctctccgtgatcacttatgttcaagggacacggtttcactctcttggnnnnnnnggcttgaaatatgcattggagctgcaaaag |
318 |
Q |
| |
|
| ||| ||||||| |||||| ||||||||||||||||||||| | |||||||| ||| ||||||||||||||||||||| ||||| || |
|
|
| T |
4904230 |
tacatgttcaatggttctctctatgatcacttatgttcaagggatctagaatcactctcatggaagaaaaggcttgaaatatgcattggagttgcaagag |
4904131 |
T |
|
| Q |
319 |
gactacactaccttcacactggagcaaagcgcccgattttccaccgtgacgtaaagccttacagcattcttttggataacaatatggcaccaaaactctc |
418 |
Q |
| |
|
|||||||||| |||||||| |||||||||||| | ||||| ||| |||| |||||||| | | |||||||| |||||||| |||| |||||||||| | |
|
|
| T |
4904130 |
gactacactatcttcacaccggagcaaagcgcgcaatttttcactgtgatataaagcctcaaacaattcttttagataacaaaatggtaccaaaactcgc |
4904031 |
T |
|
| Q |
419 |
gcaatttggattatccttacaagggaagctttcaaaatc |
457 |
Q |
| |
|
||| ||||| | ||||| |||| ||||| ||| ||||| |
|
|
| T |
4904030 |
acaacttggaatttccttgcaagagaagcgttctaaatc |
4903992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 289 - 451
Target Start/End: Original strand, 5822169 - 5822331
Alignment:
| Q |
289 |
ggcttgaaatatgcattggagctgcaaaaggactacactaccttcacactggagcaaagcgcccgattttccaccgtgacgtaaagccttacagcattct |
388 |
Q |
| |
|
|||||||||||||||| |||||||| || |||||||||||||||||||||||| |||||||| || |||| || ||||| |||| ||| | | |||||| |
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|
| T |
5822169 |
ggcttgaaatatgcatcggagctgctaagggactacactaccttcacactggaacaaagcgcacggtttttcattgtgacataaaacctcaaaccattct |
5822268 |
T |
|
| Q |
389 |
tttggataacaatatggcaccaaaactctcgcaatttggattatccttacaagggaagctttc |
451 |
Q |
| |
|
||| ||||| ||||||| |||||||||||| || ||||||| || ||||||||||||||||| |
|
|
| T |
5822269 |
tttagataagaatatggtaccaaaactctcacatcttggattttctttacaagggaagctttc |
5822331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 5821906 - 5821958
Alignment:
| Q |
20 |
tatagtgtacaaaggttatgtcaaatataatggtgaaaatgattatccaatag |
72 |
Q |
| |
|
||||||||||||||||||| ||||| ||| |||||||| ||| |||||||||| |
|
|
| T |
5821906 |
tatagtgtacaaaggttatctcaaacatagtggtgaaactgagtatccaatag |
5821958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 658 - 712
Target Start/End: Original strand, 32575992 - 32576046
Alignment:
| Q |
658 |
caattctcgattcccttgcctctctttatgttcttcttgccttttatttcttttg |
712 |
Q |
| |
|
|||||||| |||||||| |||| |||||||| |||||| ||||||||||||||| |
|
|
| T |
32575992 |
caattctcaattcccttaactctttttatgtttttcttgtcttttatttcttttg |
32576046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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