View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16780_low_11 (Length: 487)

Name: NF16780_low_11
Description: NF16780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16780_low_11
NF16780_low_11
[»] scaffold0256 (3 HSPs)
scaffold0256 (144-335)||(10295-10485)
scaffold0256 (332-431)||(10169-10268)
scaffold0256 (21-110)||(10534-10623)
[»] scaffold0133 (5 HSPs)
scaffold0133 (108-337)||(9673-9906)
scaffold0133 (102-337)||(14012-14251)
scaffold0133 (331-474)||(9506-9649)
scaffold0133 (363-474)||(13854-13965)
scaffold0133 (21-73)||(14269-14321)
[»] chr6 (5 HSPs)
chr6 (330-474)||(16782104-16782248)
chr6 (155-247)||(16782917-16783010)
chr6 (177-246)||(16875996-16876065)
chr6 (279-337)||(16659176-16659233)
chr6 (279-332)||(16661196-16661248)
[»] chr3 (3 HSPs)
chr3 (340-460)||(38938385-38938504)
chr3 (243-301)||(38938275-38938333)
chr3 (29-75)||(38942398-38942444)
[»] chr5 (2 HSPs)
chr5 (243-334)||(11982848-11982938)
chr5 (413-459)||(11983122-11983168)


Alignment Details
Target: scaffold0256 (Bit Score: 136; Significance: 1e-70; HSPs: 3)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 144 - 335
Target Start/End: Complemental strand, 10485 - 10295
Alignment:
Q  144 tgcacttcaggtacacttgccaacttgaaatattaaataattagtattacaattatttggtattggattctctctgatgaaatctaggccacacaagaac 243  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  10485 tgcacttgaggtacact-gccaacttgaaatattaaataattagtattacaattatatggtattggattctctttgatgaaatctaggccacacaagaac 10387  T
Q  244 aaatgaatgggcatgatgttgtttcataagataagttttccaattttgttttattccccttcattgccatgtagcttcacaacttgtttttt 335  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||| |||| ||||  ||||| |||||||  ||||||||||||||||||    
T  10386 aaatgaacgggcatgatgttgttacataagataagttttccaattttttttttttccttttcatggccatgtgccttcacaacttgtttttt 10295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 332 - 431
Target Start/End: Complemental strand, 10268 - 10169
Alignment:
Q  332 ttttccatagcagccaattttgacatgttgcagaagaactacatccattgatttaatatataatctttgaaaataaatcacaacgcatatttcatcttcc 431  Q
    ||||| ||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  10268 ttttctatagcagtcaattttgacatgttgcaaaagaactacatccactgatttaatatataatctttgaaaacaaataacaacgcatatttcatcttcc 10169  T

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Target: scaffold0256; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 10623 - 10534
Alignment:
Q  21 tctagagtattaaagaaagacaccgagaaaggatacctattattttgagataaacaatagtgcatgaaagtaacatgatagatacagttg 110  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  10623 tctagagtattaaagaaagacgccaagaaaggatacctattattttgagataaacaatagtgcatgaaagtaacataatagatatagttg 10534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 134; Significance: 1e-69; HSPs: 5)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 108 - 337
Target Start/End: Complemental strand, 9906 - 9673
Alignment:
Q  108 ttgccaacttgatgccaccacaccatacttggacag--tgcacttcaggtacacttgccaacttgaaatattaaataat---tagtattacaattatttg 202  Q
    ||||||||||||||||| | |||||||||||  |    ||||||||||||||||| |||||||||||||||||||||||   ||||||||||||||||||    
T  9906 ttgccaacttgatgccatcccaccatacttgatccacttgcacttcaggtacact-gccaacttgaaatattaaataataattagtattacaattatttg 9808  T
Q  203 gtattggattctctctgatgaaatctaggccacacaagaacaaatgaatgggcatgatgttgtttcataagataagttttccaattttgttttattcccc 302  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||     
T  9807 gtattggattttctttgatgaaatctaggccacacaagaacaaatgaacgagcatgatgttgtttcataagataagttttccaattttgtttttttccct 9708  T
Q  303 ttcattgccatgtagcttcacaacttgttttttcc 337  Q
    ||||| |||||||  |||||  |||||||||||||    
T  9707 ttcatggccatgtgccttcaacacttgttttttcc 9673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 102 - 337
Target Start/End: Complemental strand, 14251 - 14012
Alignment:
Q  102 atacagttgccaacttgatgccaccacaccatacttggacag--tgcacttcaggtacacttgccaacttgaaatattaaataat---tagtattacaat 196  Q
    ||||| ||||||||||||| ||| | |||||||||||  |    ||||||||||||||||| |||||||||||||||||||||||   ||||||||||||    
T  14251 atacacttgccaacttgataccatcccaccatacttgatccacttgcacttcaggtacact-gccaacttgaaatattaaataataattagtattacaat 14153  T
Q  197 tatttggtattggattctctctgatgaaatctaggccacacaagaacaaatgaatgggcatgatgttgtttcataagataagttttccaattttgtttta 296  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||     
T  14152 tatttggtattggattctctttgacgaaatctaggccacacaagaacaaatgaacggtcatgatgttgtttcatatgataagttttccaattttgttttt 14053  T
Q  297 ttccccttcattgccatgtagcttcacaacttgttttttcc 337  Q
    ||||  ||||| |||||||  ||||||||||||||||||||    
T  14052 ttccttttcatggccatgtgccttcacaacttgttttttcc 14012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 331 - 474
Target Start/End: Complemental strand, 9649 - 9506
Alignment:
Q  331 tttttccatagcagccaattttgacatgttgcagaagaactacatccattgatttaatatataatctttgaaaataaatcacaacgcatatttcatcttc 430  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||| ||||||||||||||    
T  9649 tttttctatagcagccaattttgacatgttgcagaagaactacatccactgatttaatatataatctttgaaaacaaataacaactcatatttcatcttc 9550  T
Q  431 ctagaccaaagtcatctccaatccaaacctctttgattcatttc 474  Q
    ||||| |||| |||||||||||||||||  ||||||||||||||    
T  9549 ctagagcaaaatcatctccaatccaaacaactttgattcatttc 9506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 363 - 474
Target Start/End: Complemental strand, 13965 - 13854
Alignment:
Q  363 agaagaactacatccattgatttaatatataatctttgaaaataaatcacaacgcatatttcatcttcctagaccaaagtcatctccaatccaaacctct 462  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||| |||| |||||||||||||||||  ||    
T  13965 agaagaactacatccactgatttaatatataatctttgaaaacaaataacaactcatatttcatcttcctagagcaaaatcatctccaatccaaacaact 13866  T
Q  463 ttgattcatttc 474  Q
    ||||||||||||    
T  13865 ttgattcatttc 13854  T

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Target: scaffold0133; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 14321 - 14269
Alignment:
Q  21 tctagagtattaaagaaagacaccgagaaaggatacctattattttgagataa 73  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  14321 tctagagtattaaagaaagacgccaagaaaggatacctattattttgagataa 14269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 6e-38; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 330 - 474
Target Start/End: Complemental strand, 16782248 - 16782104
Alignment:
Q  330 ttttttccatagcagccaattttgacatgttgcagaagaactacatccattgatttaatatataatctttgaaaataaatcacaacgcatatttcatctt 429  Q
    ||||||| |||||| ||||| || ||| ||||||||| ||||||||||| |||||||||| |||||||||||||| |||| ||||| |||||||||||||    
T  16782248 ttttttctatagcaaccaatattcacaagttgcagaaaaactacatccactgatttaatagataatctttgaaaacaaataacaactcatatttcatctt 16782149  T
Q  430 cctagaccaaagtcatctccaatccaaacctctttgattcatttc 474  Q
    |||||| |||||||||||| |||| ||||  ||||||||||||||    
T  16782148 cctagagcaaagtcatctctaatctaaacaactttgattcatttc 16782104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 155 - 247
Target Start/End: Complemental strand, 16783010 - 16782917
Alignment:
Q  155 tacacttgccaacttgaaatat-taaataattagtattacaattatttggtattggattctctctgatgaaatctaggccacacaagaacaaat 247  Q
    ||||||| |||||||||||||| ||||||||||||||||| ||||||||  | ||||||||||||| |||| |||||| ||| | |||||||||    
T  16783010 tacacttcccaacttgaaatatataaataattagtattactattatttgtgactggattctctctggtgaagtctaggtcaccctagaacaaat 16782917  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 177 - 246
Target Start/End: Original strand, 16875996 - 16876065
Alignment:
Q  177 taaataattagtattacaattatttggtattggattctctctgatgaaatctaggccacacaagaacaaa 246  Q
    ||||||||||||||||  ||||||||  | ||||||||||| | ||||||||||||||||||||||||||    
T  16875996 taaataattagtattaatattatttgtgactggattctctccggtgaaatctaggccacacaagaacaaa 16876065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 337
Target Start/End: Complemental strand, 16659233 - 16659176
Alignment:
Q  279 ttttccaattttgttttattccccttcattgccatgtagcttcacaacttgttttttcc 337  Q
    |||||||| |||||||| |||||||||||||||||||| ||| ||||| ||||||||||    
T  16659233 ttttccaaatttgtttt-ttccccttcattgccatgtaccttaacaacatgttttttcc 16659176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 279 - 332
Target Start/End: Complemental strand, 16661248 - 16661196
Alignment:
Q  279 ttttccaattttgttttattccccttcattgccatgtagcttcacaacttgttt 332  Q
    |||||||||||| |||| |||||||||||||||||||| ||||||||| |||||    
T  16661248 ttttccaattttatttt-ttccccttcattgccatgtaccttcacaacatgttt 16661196  T

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Target: chr3 (Bit Score: 73; Significance: 4e-33; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 340 - 460
Target Start/End: Original strand, 38938385 - 38938504
Alignment:
Q  340 agcagccaattttgacatgttgcagaagaactacatccattgatttaatatataatctttgaaaataaatcacaacgcatatttcatcttcctagaccaa 439  Q
    |||||||||| |||||| ||||||||||||||||||||| |||||||||| | |||||||||||| |||| || || ||||||||||||||||||| |||    
T  38938385 agcagccaatattgacaagttgcagaagaactacatccactgatttaatagacaatctttgaaaaaaaataactacacatatttcatcttcctagagcaa 38938484  T
Q  440 agtcatctccaatccaaacct 460  Q
    || ||||||||||||||||||    
T  38938485 ag-catctccaatccaaacct 38938504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 243 - 301
Target Start/End: Original strand, 38938275 - 38938333
Alignment:
Q  243 caaatgaatgggcatgatgttgtttcataagataagttttccaattttgttttattccc 301  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||    
T  38938275 caaatgaatggacatgatgttgtttcatatgataagttttccaattttgtttttttccc 38938333  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 38942398 - 38942444
Alignment:
Q  29 attaaagaaagacaccgagaaaggatacctattattttgagataaac 75  Q
    |||||||||||||||| ||||||||||| || |||||||| ||||||    
T  38942398 attaaagaaagacaccaagaaaggatacttaatattttgatataaac 38942444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 243 - 334
Target Start/End: Original strand, 11982848 - 11982938
Alignment:
Q  243 caaatgaatgggcatgatgttgtttcataagataagttttccaattttgttttattccccttcattgccatgtagcttcacaacttgttttt 334  Q
    ||||||||||| ||||||||||||| |   ||||||||||||||||||||||| ||||||||||||| |||||| |||  ||||||||||||    
T  11982848 caaatgaatggacatgatgttgtttgaattgataagttttccaattttgtttt-ttccccttcattgtcatgtaccttaccaacttgttttt 11982938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 413 - 459
Target Start/End: Original strand, 11983122 - 11983168
Alignment:
Q  413 aacgcatatttcatcttcctagaccaaagtcatctccaatccaaacc 459  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||    
T  11983122 aacgcatatttcatcttcatagagcaaagtcatctccaatccaaacc 11983168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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