View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16780_low_13 (Length: 451)
Name: NF16780_low_13
Description: NF16780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16780_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 141; Significance: 9e-74; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 202 - 434
Target Start/End: Original strand, 31046194 - 31046422
Alignment:
| Q |
202 |
ataataaaccactaatacataatttttcttccattttcttcatcttctaccttccannnnnnncattatcttcatcaaccttcaaggnnnnnnnntccaa |
301 |
Q |
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| T |
31046194 |
ataataaaccactgatacataatttttcttccattttcttcatcttctaccttccatttttt-cattatcttcatcaaccttcaaggaaaagaaattcaa |
31046292 |
T |
|
| Q |
302 |
ataccaaagcactaaatcactgcactgcgcccgtcttcatcttcttctcttcaaacactccaatttaacatattatcgtgaatgaatttgatttgtctct |
401 |
Q |
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| T |
31046293 |
ataccaaaccactaaatcactacactgc---catcttcatcttcttctcttcacacactccaatttaacatattgtcgtgaatgaatttgatttgtctct |
31046389 |
T |
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| Q |
402 |
tcctaccggtttgtttactcatattcttaagaa |
434 |
Q |
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| T |
31046390 |
tcctaccggtttgtttactcatattcttaagaa |
31046422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 186 - 257
Target Start/End: Original strand, 31052482 - 31052553
Alignment:
| Q |
186 |
aagacaattaaatttaataataaaccactaatacataatttttcttccattttcttcatcttctaccttcca |
257 |
Q |
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| T |
31052482 |
aagaccattaaatctaacaataaactactgatacataatttttcttccattttcttcatcttctaccttcca |
31052553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 12154786 - 12154747
Alignment:
| Q |
215 |
aatacataatttttcttccattttcttcatcttctacctt |
254 |
Q |
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| T |
12154786 |
aatacataatttttctttccttttcttcatcttctacctt |
12154747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 247
Target Start/End: Complemental strand, 10168663 - 10168595
Alignment:
| Q |
179 |
atcatgaaagacaattaaatttaataataaaccactaatacataatttttcttccattttcttcatctt |
247 |
Q |
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| T |
10168663 |
atcatgcaagaccatttaatcttataatagaccacaaacacatgatttttctttcattttcttcatctt |
10168595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 250
Target Start/End: Complemental strand, 23331215 - 23331146
Alignment:
| Q |
181 |
catgaaagacaattaaatttaataataaaccactaatacataatttttcttccattttcttcatcttcta |
250 |
Q |
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| T |
23331215 |
catgcaagactattaaatctaatagtcaaccaccaacacataatttttctttccttttcttcaccttcta |
23331146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 248
Target Start/End: Complemental strand, 43098144 - 43098104
Alignment:
| Q |
208 |
aaccactaatacataatttttcttccattttcttcatcttc |
248 |
Q |
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|||||| || |||||||||||||| |||||||||||||||| |
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| T |
43098144 |
aaccaccaacacataatttttctttcattttcttcatcttc |
43098104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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