View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16780_low_14 (Length: 437)
Name: NF16780_low_14
Description: NF16780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16780_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 13 - 420
Target Start/End: Original strand, 43503979 - 43504387
Alignment:
| Q |
13 |
gaaatgaaatcaacaaaaccacttgacccaagaatgcaataaaccaaacaaaccagaaaacttaacaagcaaacccgaaataattaaagacgagagaagg |
112 |
Q |
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| T |
43503979 |
gaaatgaaatcaacaaaaccacttgacccaagaatgcaataaaccaaacaaaccagaaaacttaacaagcaaacccgaaacaattaaagacgagagaagg |
43504078 |
T |
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| Q |
113 |
aagataacaccaataattcacgtggtttagtcttgatacctactccacgggagagtgagagaagcaagttttcactatgatgaggaacaatacatgatca |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43504079 |
aagataacaccaataattcacgtggtttagtcttgatacctactccacgggagagtgagagaagcaagttttcactatgatgaggaacaatacaagatca |
43504178 |
T |
|
| Q |
213 |
agtcattgtcatagcgtttttctttg-cccctaccaataacccaattgagaaatagttacaagaatctcaacgtctttcccactctatttttacacaatt |
311 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
43504179 |
agtcattgtcatagcgtttttctttgccccctaccaataacccaattgagaaacagttacaagaatttcaacgtctttcccactctatttttacacaatt |
43504278 |
T |
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| Q |
312 |
ctcttttatctctctaattctcttttcaaattgtagacagtttacgtgaagtgcttcacaattcgattccttggattactcacatagagatactatatgc |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43504279 |
ctcttttatctctctaattctcttttcaaattgtagacagtttacgtgaagtgcttcacaattcgattccttggattactcacatagagatactatatgc |
43504378 |
T |
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| Q |
412 |
tatttatat |
420 |
Q |
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||||||||| |
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| T |
43504379 |
tatttatat |
43504387 |
T |
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