View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16780_low_16 (Length: 435)
Name: NF16780_low_16
Description: NF16780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16780_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 7 - 420
Target Start/End: Original strand, 37410764 - 37411178
Alignment:
| Q |
7 |
gtgagatgaatctattttaacagggaagggtattatgcatgggaggataatacaaattcaagaaattatgaaggcacaaaaggaggggtagcaatttgta |
106 |
Q |
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||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37410764 |
gtgagctgaatctattttaacagggaagggtattatacatgggaggataatacaaattcaagaaattatgaaggcacaaaaggaggggtagcaatttgta |
37410863 |
T |
|
| Q |
107 |
tttcagcttgtgatgatgatcaagtctctgtagatacctcggttagtaatcatttttctctttcatatatttgtgcaatgtcttacnnnnnnnaaggtat |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37410864 |
tttcagcttgtgatgatgatcaagtctctgtagatacctcggttagtaatcatttttctctttcatatatttgtgcaatgtcttactttttttaaggtat |
37410963 |
T |
|
| Q |
207 |
gtttggattgctagtaaagagagtgaaatagaatgaaatagtcgataaaaacatgaatgttatcttggtttattttattccatttcattccaccctatac |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37410964 |
gtttggattgctagtaaagagagtgaaatagaatgaaatagtcgataaaaacatgaatgttatcttggtttattttattccatttcattccaccctatac |
37411063 |
T |
|
| Q |
307 |
cagcaattcaaacataccgattcgttggaaaaagagattgatgaacttatttgtggtttgat-tagacaggccttaagtggaaaagaagttacaggtgcc |
405 |
Q |
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| T |
37411064 |
cagcaattcaaacataccgattcgttggaaaaagagattgatgaacttatttgtggtttgatatagacaggccttaagtggaaaagaagttacaggtgcc |
37411163 |
T |
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| Q |
406 |
ttgacttatagtttc |
420 |
Q |
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| T |
37411164 |
ttgacttatagtttc |
37411178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 56 - 129
Target Start/End: Complemental strand, 2936688 - 2936615
Alignment:
| Q |
56 |
atacaaattcaagaaattatgaaggcacaaaaggaggggtagcaatttgtatttcagcttgtgatgatgatcaa |
129 |
Q |
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| T |
2936688 |
atacaaattcaataactgataaatacacaaaagttggggtagcaatttgtatttcatcttgtgatgatggtcaa |
2936615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 324
Target Start/End: Original strand, 14669948 - 14669990
Alignment:
| Q |
282 |
tattccatttcattccaccctataccagcaattcaaacatacc |
324 |
Q |
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| T |
14669948 |
tattccatttcattccaccctataccacaaatccaaacatacc |
14669990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 126
Target Start/End: Complemental strand, 1712663 - 1712614
Alignment:
| Q |
77 |
aaggcacaaaaggaggggtagcaatttgtatttcagcttgtgatgatgat |
126 |
Q |
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||||||||| ||| ||| ||||| |||| ||||||||||||||||||||| |
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| T |
1712663 |
aaggcacaagaggtgggctagcagtttgcatttcagcttgtgatgatgat |
1712614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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