View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16780_low_17 (Length: 432)
Name: NF16780_low_17
Description: NF16780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16780_low_17 |
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| [»] scaffold0133 (2 HSPs) |
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Alignment Details
Target: scaffold0133 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 261 - 344
Target Start/End: Original strand, 14418 - 14501
Alignment:
| Q |
261 |
gcaatactcgactagaaataaatatgattaaataaccaataccaatcagaagttggagcatctatacgaagattgcaaaaactg |
344 |
Q |
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| T |
14418 |
gcaatactcaactaaaaatacatatgataaaataaccaataccaatcagaagttggtgcatctaaacgaagattgcaaaaactg |
14501 |
T |
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Target: scaffold0133; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 368 - 404
Target Start/End: Original strand, 14505 - 14541
Alignment:
| Q |
368 |
agaagttggtgcgatagaaacaatatttgtctagttt |
404 |
Q |
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| T |
14505 |
agaagttggtgcgatagaaacaatatttgtctagttt |
14541 |
T |
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Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 38942265 - 38942211
Alignment:
| Q |
68 |
actaactgcagacaagttatcacaaaatacgttcattggttgtattgtgtggctg |
122 |
Q |
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| T |
38942265 |
actaactgcagacaagttatcacaaaatactttcattgattgtgttgtgtggctg |
38942211 |
T |
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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 16783126 - 16783172
Alignment:
| Q |
76 |
cagacaagttatcacaaaatacgttcattggttgtattgtgtggctg |
122 |
Q |
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| T |
16783126 |
cagacaagttatcacaaaatactttcattgattgtgttgtgtggctg |
16783172 |
T |
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