View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16780_low_18 (Length: 421)
Name: NF16780_low_18
Description: NF16780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16780_low_18 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 278 - 421
Target Start/End: Complemental strand, 38831713 - 38831570
Alignment:
| Q |
278 |
ttagaattatattctaaggttgttgatctattattttttgtgtttatagtgtgtggaaattaatcaagaaactagccaaataggattatcatgctagcag |
377 |
Q |
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| T |
38831713 |
ttagaattatattctaaggttgttgatctattattttttgtgtttatagtgtgtggaaattaatcaagaaactagccaaataggattatcatgctagcag |
38831614 |
T |
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| Q |
378 |
tggcaccattgagtagcataagagatgaaagccaaagagaaatg |
421 |
Q |
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| T |
38831613 |
tggcaccattgagtagcataagagatgaaagccaaagagaaatg |
38831570 |
T |
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Target: chr2; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 11 - 187
Target Start/End: Complemental strand, 38831971 - 38831803
Alignment:
| Q |
11 |
gctagattattcttccaaacactcccttgccgcttcctaaaaaggcaacattaccattttcaaagtccattaaggagagcaaaagttccatctctttcac |
110 |
Q |
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| T |
38831971 |
gctagtttcttcttccaaacactcccttgccgcttcctaaaaaggcaacattaccattttcaaagtccattaaggagagcaaaagttccatctctttcac |
38831872 |
T |
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| Q |
111 |
aagaaaactaaaccttaattgagtgcaataaatcaaaaacattcctaccctagctactagctagcatgtaagttctc |
187 |
Q |
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| T |
38831871 |
aagaaaactaaaccttaattgagtg--------caaaaacattcctaccctagctactagctagcatgtaagttctc |
38831803 |
T |
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