View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16780_low_2 (Length: 687)

Name: NF16780_low_2
Description: NF16780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16780_low_2
NF16780_low_2
[»] chr2 (7 HSPs)
chr2 (1-635)||(43867171-43867806)
chr2 (1-470)||(43863696-43864149)
chr2 (15-511)||(43874866-43875357)
chr2 (360-463)||(38989109-38989212)
chr2 (95-149)||(38989423-38989477)
chr2 (6-52)||(38989526-38989572)
chr2 (534-583)||(43875362-43875411)
[»] chr4 (4 HSPs)
chr4 (95-505)||(52186780-52187191)
chr4 (393-472)||(15527301-15527380)
chr4 (15-52)||(52187240-52187277)
chr4 (393-433)||(35968336-35968376)
[»] chr3 (14 HSPs)
chr3 (24-443)||(777851-778270)
chr3 (336-446)||(480963-481073)
chr3 (336-487)||(476010-476161)
chr3 (354-463)||(1304691-1304800)
chr3 (354-446)||(1186243-1186335)
chr3 (354-446)||(1204307-1204399)
chr3 (356-419)||(5361014-5361077)
chr3 (406-484)||(2996512-2996590)
chr3 (96-148)||(1186544-1186596)
chr3 (96-148)||(1204608-1204660)
chr3 (96-148)||(1304430-1304482)
chr3 (378-442)||(4149603-4149667)
chr3 (378-442)||(4165375-4165439)
chr3 (349-421)||(7125963-7126035)
[»] scaffold0438 (1 HSPs)
scaffold0438 (357-463)||(5312-5418)
[»] chr5 (3 HSPs)
chr5 (357-442)||(33958061-33958146)
chr5 (379-464)||(19658349-19658434)
chr5 (379-464)||(19675188-19675273)
[»] chr7 (2 HSPs)
chr7 (370-446)||(32413636-32413712)
chr7 (349-422)||(6889182-6889255)
[»] chr6 (6 HSPs)
chr6 (370-443)||(7115536-7115609)
chr6 (370-443)||(7120608-7120681)
chr6 (370-443)||(7124012-7124085)
chr6 (370-422)||(7140726-7140778)
chr6 (99-139)||(7175105-7175145)
chr6 (370-422)||(8680340-8680392)
[»] scaffold0896 (1 HSPs)
scaffold0896 (370-443)||(2255-2328)
[»] chr1 (1 HSPs)
chr1 (392-424)||(42602903-42602935)


Alignment Details
Target: chr2 (Bit Score: 491; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 1 - 635
Target Start/End: Original strand, 43867171 - 43867806
Alignment:
Q  1 cgatgaaaggaaaggtactttaaagacaagctggttaatgctggcaaattcaannnnnnnggaaatattggtatctgaccaaacaatatattgtaaccag 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| ||| ||       ||||||||||||||||||||||||||||||| ||||||||    
T  43867171 cgatgaaaggaaaagtactttaaagacaagctggttaatgctggcagatttaaattttttggaaatattggtatctgaccaaacaatatatcgtaaccag 43867270  T
Q  101 aaagattaagagacgttaatgtgtgacatgaaaagaagcaagagggaaagaggtcaatacgacaagggaaattcattagcaagtgttggacattgtatga 200  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||    
T  43867271 aaagattaagagacgttaatgtgtgacacgaaaagaagcaagagggaaagaggtcaatacgacaagggaaattcattagtaagtgttggacattgtggga 43867370  T
Q  201 aatagtgtattttataatcagttagaataggcttggctccaagcaatatgggcagtaaacatcgagagtgtgtatagtagttgagccatcgcgaagagat 300  Q
    ||||| |||||||||||||| || ||| ||||| ||||||||| ||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  43867371 aatagcgtattttataatcatttggaacaggctaggctccaagtaatataggcagtgaacatcgagagtgtgtatagtggttgagccatcgcgaagagat 43867470  T
Q  301 aaaaagtgagacaggaattcggctaaacttttctcggtcttaaagttcgaagaacttaatgtaatagtaggaagacccttccagagattgatccatcttt 400  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  43867471 aaaaagtgagacaggaattcggctaaacttttctcggtcctaaagttcgaagaacttaatgtaatagtaggaagacccttccagagagtgatccatcttt 43867570  T
Q  401 tggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaaggacaatacgtgaatgagaatacaatcagttaagttactgataatgtcttcgttttc 500  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  43867571 tggacaaaatgcaagtttgagcggcctcttttgcgttcaaaaaggacagtacgtgaatgagaatacaatcagtcaagttactgataatgtcttcgttttc 43867670  T
Q  501 gttgtgcttatgtttcctgctacgtaggctacctctcaccattgtctcgtaaacaaacacttctacaagcaaatgggacaagtgtttattgttattaggc 600  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||    
T  43867671 gttgtgcttatgtttcctgctacgtaggcttcgtctcaccattgtctcgtaaacaaaaacttctacaagcaaatgggacaagtgtttgttgttgttaggc 43867770  T
Q  601 atgtggagggaagtg-aacaaaattcattggaggaa 635  Q
    |||||||||||| || || |||||||||||||||||    
T  43867771 atgtggagggaaatgaaataaaattcattggaggaa 43867806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 470
Target Start/End: Original strand, 43863696 - 43864149
Alignment:
Q  1 cgatgaaaggaaaggtactttaaagacaagctggttaatgctggcaaattcaannnnnnnggaaatattggtatctgaccaaacaatatattgtaaccag 100  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||||||||       ||||||||||||||||||||||||||||||| ||||||||    
T  43863696 cgatgaaaggaaaagtactttaaagacaaggtggttaatgctggcaaattcaaatgttttggaaatattggtatctgaccaaacaatatatcgtaaccag 43863795  T
Q  101 aaagattaagagac-gttaatgtgtgacatgaaaagaagcaagagggaaagaggtcaatacgacaagggaaattcattagcaagtgttggacattgtatg 199  Q
    |||||| ||||||| |||||||||||||||||||||||| |||||||||||||      |  |||||||||||||||||| ||||||            |    
T  43863796 aaagataaagagaccgttaatgtgtgacatgaaaagaaggaagagggaaagag------aaaacaagggaaattcattagtaagtgt------------g 43863877  T
Q  200 aaatagtgtattttataatcagttagaataggcttggctccaagcaatatgggcagtaaacatcgagagtgtgtatagtagttgagccatcgcgaagaga 299  Q
    |||||  |||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  43863878 aaataacgtattttataatcattttgaataggcttggctccaaggaatatgggcagtaaacatcgagagtgtgtatagtggttgagccatcgcgaagaga 43863977  T
Q  300 taaaaagtgagacaggaattcggctaaacttttctcggtcttaaagttcgaagaacttaatgtaa-tagtaggaagacccttccagagattgatccatct 398  Q
    |||||| |||||||| ||||||  |||||||| || |||| ||||||| |||||||||||||||| |||||||||||| |||||| ||||||||||||||    
T  43863978 taaaaattgagacagaaattcgcttaaactttccttggtcctaaagtttgaagaacttaatgtaattagtaggaagactcttccaaagattgatccatct 43864077  T
Q  399 tttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaaggacaatacgtgaatgagaatacaatc 470  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||| || ||||||||||||||||||    
T  43864078 tttggacaaaatgcaagtttgaacggccttttttgcattcaaaaaggacagtatgtgaatgagaatacaatc 43864149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 15 - 511
Target Start/End: Original strand, 43874866 - 43875357
Alignment:
Q  15 gtactttaaagacaagctggttaatgctggcaaattcaannnnnnnggaaatattggtatctgaccaaacaatatattgtaaccagaaagattaagagac 114  Q
    |||||||||||||||||||||||||| ||||||||||||       ||||||||| ||||| ||||||||||||||| |||||||||||||||||||||     
T  43874866 gtactttaaagacaagctggttaatgttggcaaattcaatttttttggaaatatttgtatccgaccaaacaatatatcgtaaccagaaagattaagagaa 43874965  T
Q  115 gttaatgtgtgacatgaaaagaagcaagagggaaagaggtcaatacgacaagggaaattcattagcaagtgttggacattgtatgaaatagtgtatttta 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||| |||||||||| ||||| ||  ||||  |||||||    
T  43874966 gttaatgtgtgacatgaaaagaagcaagagggaaagaggtcaatacaacaagggatatccattagtaagtgttggatattgtgtgtgatagcatatttta 43875065  T
Q  215 taatcagttagaataggcttggctccaagcaatatgggcagtaaacatcgagagtgtgtatagtagttgagccatcgcgaagagataaaaagtgagacag 314  Q
    |||| | || |||||  |||||||| | | ||||| |||||| ||||||  ||||||||||||| ||||||||||||| |||||||||||| ||||||||    
T  43875066 taataatttggaatatacttggctcaatgtaatatcggcagtcaacatc--gagtgtgtatagtggttgagccatcgcaaagagataaaaattgagacag 43875163  T
Q  315 gaattcggctaaacttttctcggtcttaaagttcgaagaacttaatgtaatagtaggaagacccttccagagattgatccatcttttggacaaaatgcaa 414  Q
    |||| |    ||| ||| || |||| ||||||   | |||| |||||||| ||| ||||||| |||||| ||||||||||||||||||||||||||||||    
T  43875164 gaatacactgaaagtttccttggtcctaaagt---atgaacataatgtaagagtgggaagactcttccaaagattgatccatcttttggacaaaatgcaa 43875260  T
Q  415 gtttgaacggcctcttttgcgttcaaaaaggacaatacgtgaatgagaatacaatcagttaagttactgataatgtcttcgttttcgttgtgcttat 511  Q
    ||||||||| |||||||||| || |||||||||| || ||||||||||||||||||  | |||||||||||||||||||| |||| ||||| |||||    
T  43875261 gtttgaacgacctcttttgcatttaaaaaggacactatgtgaatgagaatacaatcgatcaagttactgataatgtcttcatttttgttgtccttat 43875357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 360 - 463
Target Start/End: Complemental strand, 38989212 - 38989109
Alignment:
Q  360 tgtaatagtaggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaaggacaatacgtgaatg 459  Q
    ||||||||| | ||||| |||||||||| ||||||||||||||||||||| ||| |||||||| |||| | ||||||| | |||||||| || ||||| |    
T  38989212 tgtaatagtggaaagactcttccagagaatgatccatcttttggacaaaacgcatgtttgaacagcctgtattgcgtttagaaaggacagtatgtgaagg 38989113  T
Q  460 agaa 463  Q
    ||||    
T  38989112 agaa 38989109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 149
Target Start/End: Complemental strand, 38989477 - 38989423
Alignment:
Q  95 aaccagaaagattaagagacgttaatgtgtgacatgaaaagaagcaagagggaaa 149  Q
    |||||||||||||||||||| |||| |||||||||||||||| |||||| |||||    
T  38989477 aaccagaaagattaagagactttaaagtgtgacatgaaaagaggcaagacggaaa 38989423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 38989572 - 38989526
Alignment:
Q  6 aaaggaaaggtactttaaagacaagctggttaatgctggcaaattca 52  Q
    ||||| || |||||||||||||||| ||||||||| |||||||||||    
T  38989572 aaaggcaaagtactttaaagacaagttggttaatgatggcaaattca 38989526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 583
Target Start/End: Original strand, 43875362 - 43875411
Alignment:
Q  534 tctcaccattgtctcgtaaacaaacacttctacaagcaaatgggacaagt 583  Q
    |||||||||  ||| ||||||||||| |||||||||||||||| ||||||    
T  43875362 tctcaccatattcttgtaaacaaacaattctacaagcaaatggaacaagt 43875411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 9e-41; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 95 - 505
Target Start/End: Complemental strand, 52187191 - 52186780
Alignment:
Q  95 aaccagaaagattaagagacgttaatgtgtgacatgaaaagaagcaagagggaaagaggtcaatacgacaagggaaattcattagcaagtgttggacatt 194  Q
    ||||||||||||||||||||||||| ||| |||||||||||| |||||| ||||||   |||||| |||||| | |||  | ||  ||||||||||||||    
T  52187191 aaccagaaagattaagagacgttaaagtgcgacatgaaaagatgcaagaaggaaagtcttcaatatgacaagtgtaatcaagtattaagtgttggacatt 52187092  T
Q  195 gtatgaaatagtgtattttataatcagttagaataggcttggctccaagcaatatgggcagtaaacatcgagagtgtgtatagtagttgagccatcgcga 294  Q
    || ||||| |||||||| ||| |||  |  || |||| | |||| || | | |   | |  || | ||| |||||||| || |  ||||||||||| |||    
T  52187091 gtgtgaaacagtgtattctatgatccttgggagtagggtaggcttcatgtactgacgacgatacaaatcaagagtgtggatggcggttgagccatcacga 52186992  T
Q  295 agagataaaaagtgagacaggaattcggctaaacttttct--cggtcttaaagttcgaagaacttaatgtaatagtaggaagacccttccagagattgat 392  Q
    ||||| | ||  |||||||  |||||  | |||||||| |  ||| | ||||||  |||||||||| ||||| ||| ||||||| | |||||||| ||||    
T  52186991 agagagagaatctgagacacaaattcatc-aaactttttttccggacctaaagtatgaagaacttagtgtaagagtgggaagactcctccagagaatgat 52186893  T
Q  393 ccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaaggacaatacgtgaatgagaatacaatcagttaagttactgataatgtct 492  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||| |||||| | || ||| | ||||| | ||||||| |||| |||||||||||||    
T  52186892 ccatcttttggacaaaatgcaggtttgaacggcctgttttgcgttcagaaaggagagtaggtggaggagaacagaatcagtcaagtcactgataatgtct 52186793  T
Q  493 tcgttttcgttgt 505  Q
    || |||| |||||    
T  52186792 tcatttttgttgt 52186780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 393 - 472
Target Start/End: Original strand, 15527301 - 15527380
Alignment:
Q  393 ccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaaggacaatacgtgaatgagaatacaatcag 472  Q
    |||||||||||||| |||||||||| |||| || ||||| | | ||||||| ||||| | |||||||| ||| |||||||    
T  15527301 ccatcttttggacagaatgcaagttcgaacagcgtctttagtgctcaaaaatgacaaaatgtgaatgataatgcaatcag 15527380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 52187277 - 52187240
Alignment:
Q  15 gtactttaaagacaagctggttaatgctggcaaattca 52  Q
    |||||||| ||||||| |||||||||||||||||||||    
T  52187277 gtactttagagacaagttggttaatgctggcaaattca 52187240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 393 - 433
Target Start/End: Complemental strand, 35968376 - 35968336
Alignment:
Q  393 ccatcttttggacaaaatgcaagtttgaacggcctcttttg 433  Q
    ||||||||||||||||| ||||||||||||| ||| |||||    
T  35968376 ccatcttttggacaaaacgcaagtttgaacgacctgttttg 35968336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 6e-39; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 24 - 443
Target Start/End: Original strand, 777851 - 778270
Alignment:
Q  24 agacaagctggttaatgctggcaaattcaannnnnnnggaaatattggtatctgaccaaacaatatattgtaaccagaaagattaagagacgttaatgtg 123  Q
    ||||||||| ||||||||||| ||||||||       ||||||||  || | |||||||||||||||| | ||||||||||||||||||||||||| ||     
T  777851 agacaagcttgttaatgctggtaaattcaaaaaatttggaaatatgagtttgtgaccaaacaatatatggaaaccagaaagattaagagacgttaaagtt 777950  T
Q  124 tgacatgaaaagaagcaagagggaaagaggtcaatacgacaagggaaattcattagcaagtgttggacattgtatgaaatagtgtattttataatcagtt 223  Q
    ||||||||||||||||| || |||||  | | ||||  ||| ||||||| ||||| |||||| |||||||||| ||||| |  |||||| ||||||  ||    
T  777951 tgacatgaaaagaagcatgatggaaaatgattaatatcacaggggaaatccattatcaagtgctggacattgtgtgaaacaacgtatttaataatccttt 778050  T
Q  224 agaataggcttggctccaagcaatatgggcagtaaacatcgagagtgtgtatagtagttgagccatcgcgaagagataaaaagtgagacaggaattcggc 323  Q
     || ||||||  ||||||  |||||   ||  | ||  || |||    | |||||  |||||||||| |||||||| ||||  ||||| | ||||||  |    
T  778051 ggagtaggctatgctccatacaataattgcgctgaaagtcaagaacacggatagtgattgagccatcacgaagagacaaaatctgagaaacgaattcttc 778150  T
Q  324 taaacttttctcggtcttaaagttcgaagaacttaatgtaatagtaggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaacg 423  Q
     ||||| |    |||  ||||||  |||||||||||||||| ||| || |||   ||||||||||||||||||||||||||||||||||||||||| ||     
T  778151 aaaactgtcggaggttctaaagtgtgaagaacttaatgtaagagtgggtagaattttccagagattgatccatcttttggacaaaatgcaagtttggact 778250  T
Q  424 gcctcttttgcgttcaaaaa 443  Q
    |||||||| || ||||||||    
T  778251 gcctctttggctttcaaaaa 778270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 336 - 446
Target Start/End: Complemental strand, 481073 - 480963
Alignment:
Q  336 ggtcttaaagttcgaagaacttaatgtaatagtaggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcg 435  Q
    |||| ||||||| ||||||||||| ||||  || ||||||  ||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||    
T  481073 ggtcctaaagtttgaagaacttaaggtaagcgtgggaagagtcttccagagattgatccatcttttggataaaatacaagtttgaacggcctctttggcg 480974  T
Q  436 ttcaaaaagga 446  Q
    || ||||||||    
T  480973 tttaaaaagga 480963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 336 - 487
Target Start/End: Complemental strand, 476161 - 476010
Alignment:
Q  336 ggtcttaaagttcgaagaacttaatgtaatagtaggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcg 435  Q
    |||| ||||||| |||||||||| |||||  || ||||||   |||||||||||||||||||||||||| ||||| |||||||||||||| ||||| |||    
T  476161 ggtcctaaagtttgaagaacttagtgtaagggtgggaagagtattccagagattgatccatcttttggataaaatacaagtttgaacggcttctttggcg 476062  T
Q  436 ttcaaaaaggacaatacgtgaatgagaatacaatcagttaagttactgataa 487  Q
    || |||||||| | |  ||||| |||||||||||| | ||| | ||||||||    
T  476061 tttaaaaaggagagtgtgtgaaggagaatacaatctgataaatcactgataa 476010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 354 - 463
Target Start/End: Original strand, 1304691 - 1304800
Alignment:
Q  354 acttaatgtaatagtaggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaaggacaatacg 453  Q
    ||||||||||| ||| | ||||  |||||||||||||||||||||||| || ||||||||||||||||| |||||||| || ||||||||||| | || |    
T  1304691 acttaatgtaagagtggaaagagtcttccagagattgatccatcttttcgataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatg 1304790  T
Q  454 tgaatgagaa 463  Q
    ||| ||||||    
T  1304791 tgattgagaa 1304800  T

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Target: chr3; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 354 - 446
Target Start/End: Complemental strand, 1186335 - 1186243
Alignment:
Q  354 acttaatgtaatagtaggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaagga 446  Q
    ||||||||||| ||| | ||||  |||||||||||||||||||||||| || ||||||||||||||||| |||||||| || |||||||||||    
T  1186335 acttaatgtaagagtggaaagagtcttccagagattgatccatcttttcgataaaatgcaagtttgaactgcctctttggcattcaaaaagga 1186243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 354 - 446
Target Start/End: Complemental strand, 1204399 - 1204307
Alignment:
Q  354 acttaatgtaatagtaggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaagga 446  Q
    ||||||||||| ||| | ||||  |||||||||||||||||||||||| || ||||||||||||||||| |||||||| || |||||||||||    
T  1204399 acttaatgtaagagtggaaagagtcttccagagattgatccatcttttcgataaaatgcaagtttgaactgcctctttggcattcaaaaagga 1204307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 356 - 419
Target Start/End: Original strand, 5361014 - 5361077
Alignment:
Q  356 ttaatgtaatagtaggaagacccttccagagattgatccatcttttggacaaaatgcaagtttg 419  Q
    |||||| || ||| ||||||  ||||||||||||| ||||||||||||| ||||||||||||||    
T  5361014 ttaatgcaagagttggaagagtcttccagagattggtccatcttttggataaaatgcaagtttg 5361077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 406 - 484
Target Start/End: Original strand, 2996512 - 2996590
Alignment:
Q  406 aaaatgcaagtttgaacggcctcttttgcgttcaaaaaggacaatacgtgaatgagaatacaatcagttaagttactga 484  Q
    ||||||||||||||||| || ||||||| ||||||||| || | || ||||| || || |||||||||||||| |||||    
T  2996512 aaaatgcaagtttgaactgcatcttttgtgttcaaaaatgaaagtatgtgaaggataacacaatcagttaagtcactga 2996590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 1186596 - 1186544
Alignment:
Q  96 accagaaagattaagagacgttaatgtgtgacatgaaaagaagcaagagggaa 148  Q
    ||||| |||||||||||||||||| |||||| |||||||||| || |||||||    
T  1186596 accagtaagattaagagacgttaaagtgtgagatgaaaagaaacaggagggaa 1186544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 1204660 - 1204608
Alignment:
Q  96 accagaaagattaagagacgttaatgtgtgacatgaaaagaagcaagagggaa 148  Q
    ||||| |||||||||||||||||| |||||| |||||||||| || |||||||    
T  1204660 accagtaagattaagagacgttaaagtgtgagatgaaaagaaacaggagggaa 1204608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 1304430 - 1304482
Alignment:
Q  96 accagaaagattaagagacgttaatgtgtgacatgaaaagaagcaagagggaa 148  Q
    ||||| |||||||||||||||||| |||||| |||||||||| || |||||||    
T  1304430 accagtaagattaagagacgttaaagtgtgagatgaaaagaaacaggagggaa 1304482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 378 - 442
Target Start/End: Complemental strand, 4149667 - 4149603
Alignment:
Q  378 cttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaa 442  Q
    ||||||||||||  |||||||  ||||||||| ||| ||||||||||||||||| | ||||||||    
T  4149667 cttccagagattcttccatctcgtggacaaaacgcaggtttgaacggcctctttggtgttcaaaa 4149603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 378 - 442
Target Start/End: Complemental strand, 4165439 - 4165375
Alignment:
Q  378 cttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaa 442  Q
    ||||||||||||  |||||||  ||||||||| ||| ||||||||||||||||| | ||||||||    
T  4165439 cttccagagattcttccatctcgtggacaaaacgcaggtttgaacggcctctttggtgttcaaaa 4165375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 349 - 421
Target Start/End: Complemental strand, 7126035 - 7125963
Alignment:
Q  349 gaagaacttaatgtaatagtaggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaa 421  Q
    |||||| |||||||||  || |||||||  |||||||||||  |||||||||||||||| || ||||||||||    
T  7126035 gaagaaattaatgtaagggttggaagacgtttccagagattcttccatcttttggacaagatacaagtttgaa 7125963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 357 - 463
Target Start/End: Complemental strand, 5418 - 5312
Alignment:
Q  357 taatgtaatagtaggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaaggacaatacgtga 456  Q
    |||||||| ||| ||||||  ||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||| |||||||||||||| || ||||    
T  5418 taatgtaagagtgggaagagtcttccagagattgatccatcttttggataaaatgcatgtttgaacggcctctcttgtgttcaaaaaggacagtatgtga 5319  T
Q  457 atgagaa 463  Q
    |||||||    
T  5318 atgagaa 5312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 357 - 442
Target Start/End: Original strand, 33958061 - 33958146
Alignment:
Q  357 taatgtaatagtaggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaa 442  Q
    |||||||| |||  |||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||| | | ||||||||    
T  33958061 taatgtaagagtgtgaagagtcttccagagattgatccatcttttggataaaatgcaagtttgaacggcctctctggtgttcaaaa 33958146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 379 - 464
Target Start/End: Original strand, 19658349 - 19658434
Alignment:
Q  379 ttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaaggacaatacgtgaatgagaat 464  Q
    |||||||||||  |||||||  |||||||||  |||||||||||||| | |||||||| |||||| ||||| | ||||| ||||||    
T  19658349 ttccagagattcctccatctcgtggacaaaacacaagtttgaacggcatattttgcgtccaaaaatgacaaaatgtgaaggagaat 19658434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 379 - 464
Target Start/End: Original strand, 19675188 - 19675273
Alignment:
Q  379 ttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaaggacaatacgtgaatgagaat 464  Q
    |||||||||||  |||||||  |||||||||  |||||||||||||| | |||||||| |||||| ||||| | ||||| ||||||    
T  19675188 ttccagagattcctccatctcgtggacaaaacacaagtttgaacggcatattttgcgtccaaaaatgacaaaatgtgaaggagaat 19675273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 370 - 446
Target Start/End: Complemental strand, 32413712 - 32413636
Alignment:
Q  370 ggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaagga 446  Q
    ||||||| ||||||||||||  |||||||| ||||||||||||||||||||||||| | ||| | ||||||| ||||    
T  32413712 ggaagacgcttccagagattcttccatcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagagga 32413636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 349 - 422
Target Start/End: Complemental strand, 6889255 - 6889182
Alignment:
Q  349 gaagaacttaatgtaatagtaggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaac 422  Q
    |||||||||||| |||  |||||||||   |||||||||||| ||||||||||||| | |||||||||||||||    
T  6889255 gaagaacttaatataagggtaggaagatatttccagagattgttccatcttttggatagaatgcaagtttgaac 6889182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 370 - 443
Target Start/End: Original strand, 7115536 - 7115609
Alignment:
Q  370 ggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaa 443  Q
    ||||||| ||||||||||||  ||||||||||||||||||  ||||||||||| || | ||| | |||||||||    
T  7115536 ggaagacacttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaa 7115609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 370 - 443
Target Start/End: Original strand, 7120608 - 7120681
Alignment:
Q  370 ggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaa 443  Q
    ||||||| ||||||||||||  ||||||||||||||||||  ||||||||||| || | ||| | |||||||||    
T  7120608 ggaagacacttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaa 7120681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 370 - 443
Target Start/End: Original strand, 7124012 - 7124085
Alignment:
Q  370 ggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaa 443  Q
    ||||||| ||||||||||||  ||||||||||||||||||  ||||||||||| || | ||| | |||||||||    
T  7124012 ggaagacacttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaa 7124085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 370 - 422
Target Start/End: Original strand, 7140726 - 7140778
Alignment:
Q  370 ggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaac 422  Q
    ||||||| |||||| | |||  ||||||||||||||||||| |||||||||||    
T  7140726 ggaagacacttccatatattcttccatcttttggacaaaatacaagtttgaac 7140778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 7175105 - 7175145
Alignment:
Q  99 agaaagattaagagacgttaatgtgtgacatgaaaagaagc 139  Q
    |||||| |||||||| ||||| |||||||||||||||||||    
T  7175105 agaaaggttaagagatgttaaagtgtgacatgaaaagaagc 7175145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 370 - 422
Target Start/End: Original strand, 8680340 - 8680392
Alignment:
Q  370 ggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaac 422  Q
    ||||||| |||||| | |||  ||||||||||||||||||| |||||||||||    
T  8680340 ggaagacacttccatatattcttccatcttttggacaaaatacaagtttgaac 8680392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0896 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 443
Target Start/End: Complemental strand, 2328 - 2255
Alignment:
Q  370 ggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaa 443  Q
    ||||||| ||||||||||||  |||||||||||| |||||  ||||||||||| || | ||| | |||||||||    
T  2328 ggaagacacttccagagattcttccatcttttggccaaaacacaagtttgaactgcgtatttggtgttcaaaaa 2255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 392 - 424
Target Start/End: Original strand, 42602903 - 42602935
Alignment:
Q  392 tccatcttttggacaaaatgcaagtttgaacgg 424  Q
    |||||||||||||||| ||||||||||||||||    
T  42602903 tccatcttttggacaagatgcaagtttgaacgg 42602935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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