View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16780_low_20 (Length: 397)
Name: NF16780_low_20
Description: NF16780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16780_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 23 - 381
Target Start/End: Complemental strand, 49899202 - 49898844
Alignment:
| Q |
23 |
gatgatggagtggtagatgtgaaaaacatatccattggatcacccccagaagcttgaactggtgttggattcgaaaaagccgaagatccagtaaaatcaa |
122 |
Q |
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| T |
49899202 |
gatgatggagtggtagatgtgaaaaacatatccattggatcacccccagaagcttgaactggtgttggattcgaaaaagccgaagatccagtaaaatcaa |
49899103 |
T |
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| Q |
123 |
catcaattccaacactaccaccacttgatggaaatgcattggtgcttcgttttgtagcattctgaaaatcaccaaaaccatcatcttgtgaatcaatctt |
222 |
Q |
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| T |
49899102 |
catcaattccaacactaccaccacttgatggaaatgcattggtgcttggttttgtagcattctgaaaatcaccaaaaccatcatcttgtgaatcaatctt |
49899003 |
T |
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| Q |
223 |
tgaaggtttagcagctgaattaagactagaagatggcttagatccaaaaccagccaatgaactaaaaggatctttattactagaactaattccaattcca |
322 |
Q |
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| T |
49899002 |
tgaaggtttagcagctgaattaagactagaagatggcttagatccaaaaccagccaatgaactaaaaggatctttattactagaactaattccaattcca |
49898903 |
T |
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| Q |
323 |
ctaccagatgcagcaacaccaacaccgcttcgaattgaaggacctccaatattgggact |
381 |
Q |
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| T |
49898902 |
ctaccagatgcagcaacaccaacaccgcttcgaattgaaggacctccaatattgggact |
49898844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 211 - 282
Target Start/End: Complemental strand, 40151922 - 40151851
Alignment:
| Q |
211 |
tgaatcaatctttgaaggtttagcagctgaattaagactagaagatggcttagatccaaaaccagccaatga |
282 |
Q |
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| T |
40151922 |
tgaatcagtcttttgaggtttagcaactgaatcaagactagaagattgattggatccaaaacaagtcaatga |
40151851 |
T |
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