View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16780_low_21 (Length: 396)
Name: NF16780_low_21
Description: NF16780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16780_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 17 - 377
Target Start/End: Complemental strand, 13699766 - 13699403
Alignment:
| Q |
17 |
tgaaatttatataccaactacattactcctcaacaaaaggtgggtagtctact--------gttggcacaaatcaaaatcattcatttattttgtgaatt |
108 |
Q |
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| T |
13699766 |
tgaaatttatataccaactacattactcctcaacaaaaggtgggtagtctactcatgttgagttgacacaaatcaaaatcattcatttattttgtgaatt |
13699667 |
T |
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| Q |
109 |
actgatgtaagaattagagagctaaagcagatcaagtgaaatttataagtgagatttatataccaactacatacattacccttcaacaaagggtggataa |
208 |
Q |
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| T |
13699666 |
actgatgtaagaattagagagctaaagcaga---agtgaaatttataagtgagatttatataccaacta--tacattacccttcaacaaaaggtggataa |
13699572 |
T |
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| Q |
209 |
tctagtaatgctgaattaacaccaatcaaaattatttgttcattttgtaaactactgatgtaacaaacatctaagaacaggtatatgtggaggaaaatcc |
308 |
Q |
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| T |
13699571 |
tctagtaatgctgaattaacaccaatcaaaattatttgttcattttgtaaattactgatgtaacaaacatctaagaacaggtatatgtggaggaaaatcc |
13699472 |
T |
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| Q |
309 |
tattaaattgcatagaaccattcagccaccagagaggatctgagtcgtccaaatatcactgatgatcat |
377 |
Q |
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| T |
13699471 |
tattaaattgcataggaccattcagccaccagagaggatctgagtcgtccaaatatcaccgatgatcat |
13699403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 271
Target Start/End: Complemental strand, 13699771 - 13699657
Alignment:
| Q |
153 |
ataagtgagatttatataccaactacatacattacccttcaacaaagggtggataatctagtaatgctgaattaacaccaatcaaaattatttgttcatt |
252 |
Q |
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| T |
13699771 |
ataagtgaaatttatataccaactacat----tactcctcaacaaaaggtgggtagtctactcatgttgagttgacacaaatcaaaatcattcatttatt |
13699676 |
T |
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| Q |
253 |
ttgtaaactactgatgtaa |
271 |
Q |
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| T |
13699675 |
ttgtgaattactgatgtaa |
13699657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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