View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16780_low_24 (Length: 383)
Name: NF16780_low_24
Description: NF16780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16780_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 11 - 296
Target Start/End: Original strand, 6380581 - 6380866
Alignment:
| Q |
11 |
gtgagatgaaggagaagaattcagtatgttcatactgcaatcgaacaggacatgatgcattaagctgttttcaggtagttggataccctgattggtgggg |
110 |
Q |
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| T |
6380581 |
gtgatatgaaggagaagaatgcggtatgttcatactgcaatcgaacaggacatgatgcattaagctgttttcaggtagttggataccctgattggtgggg |
6380680 |
T |
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| Q |
111 |
agataggccacgaaatgaaactaagatgggtgcaggtcgaggaaaaggacagcaacaaaccagagcttctaatcaaggacgtgggagaagcacaattgtg |
210 |
Q |
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| T |
6380681 |
agataggccacgaaatgaaactaagatgggtgcaggtcgaggaaaaggacaacaacaaaccagaggttctaatcaaggacgtgggagaagcacaattatt |
6380780 |
T |
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| Q |
211 |
catgcaaatgttgtccaaacaaatgaaggaagcccggtcgtgacaaatgcagatgcaagcgggttgacaggtttaagtaatgagca |
296 |
Q |
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| T |
6380781 |
cgtgcaaatgctgtccaaacaaatgaaggaggcccggtcgtgacaaatgcagatgcaagcgggttgacaggtttaagtagtgagca |
6380866 |
T |
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Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 11 - 296
Target Start/End: Complemental strand, 1621172 - 1620887
Alignment:
| Q |
11 |
gtgagatgaaggagaagaattcagtatgttcatactgcaatcgaacaggacatgatgcattaagctgttttcaggtagttggataccctgattggtgggg |
110 |
Q |
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|||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1621172 |
gtgatatgaaggagaagaatgcggtatgttcatactgcaatcgaacaggacatgatgcattaagctgttttcaggtagttggataccctgattggtgggg |
1621073 |
T |
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| Q |
111 |
agataggccacgaaatgaaactaagatgggtgcaggtcgaggaaaaggacagcaacaaaccagagcttctaatcaaggacgtgggagaagcacaattgtg |
210 |
Q |
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| T |
1621072 |
agataggccacgaaatgaaactaagatgggtgcaggtcgaggaaaaggacaacaacaaaccagaggttctaatcaaggacgtgggagaagcacaattatt |
1620973 |
T |
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| Q |
211 |
catgcaaatgttgtccaaacaaatgaaggaagcccggtcgtgacaaatgcagatgcaagcgggttgacaggtttaagtaatgagca |
296 |
Q |
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| T |
1620972 |
cgtgcaaatgctgtccaaacaaatgaaggaggcccggtcgtgacaaatgcagatgcaagcgggttgacaggtttaagtagtgagca |
1620887 |
T |
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