View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16780_low_28 (Length: 359)
Name: NF16780_low_28
Description: NF16780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16780_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 37410468 - 37410793
Alignment:
| Q |
1 |
tcattggtgttccattactcaggacatggcacacaggaagtgaacatgaatgagattgatcataggtatgataatgcaatttgtcctgttgatcatgagc |
100 |
Q |
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| T |
37410468 |
tcattggtgttccattactcaggacatggcacacaggaagtgaacatgaatgagattgatgataggtatgataatgcaatttgtcctgttgatcatgagc |
37410567 |
T |
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| Q |
101 |
acaaggggaagatactgaataatgagattaatgcaacaattgttaggccactaccatttggtgctaaacttcatgccattattgatgcatgtcacagtgg |
200 |
Q |
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| T |
37410568 |
acaaggggaagatgctgaataatgagattaatgcaacaattgttaggccactaccatttggtgctaaacttcatgccattattgatgcatgtcacagtgg |
37410667 |
T |
|
| Q |
201 |
gaatgttcttgatttatcatttgtgtgcaagatgaacaggtaagtttatgaataatgcttatttagtgaagtattaagtgttgatactcttttcttgtga |
300 |
Q |
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| T |
37410668 |
gaatgttcttgatttatcatttgtgtgcaagatgaacaggtaagtttatgaataatgcttatttagtgaagtattaagtgttgatactcttttcttgtga |
37410767 |
T |
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| Q |
301 |
gctgaatctattttaacagggaaggg |
326 |
Q |
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| T |
37410768 |
gctgaatctattttaacagggaaggg |
37410793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 190
Target Start/End: Complemental strand, 1716701 - 1716576
Alignment:
| Q |
65 |
ggtatgataatgcaatttgtcctgttgatcatgagcacaaggggaagatactgaataatgagattaatgcaacaattgttaggccactaccatttggtgc |
164 |
Q |
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|||||||| | ||||| || ||||| ||| ||||||| |||||| |||||| || |||| || ||||| |||||||||||||| ||||| |||||| |
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| T |
1716701 |
ggtatgatgaagcaatatgccctgtcgattatgagcaggaggggatgatactcgatgatgaaatcaatgctacaattgttaggcctctacctcatggtgc |
1716602 |
T |
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| Q |
165 |
taaacttcatgccattattgatgcat |
190 |
Q |
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| T |
1716601 |
caaactacatgcccttgttgatgcat |
1716576 |
T |
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