View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16780_low_32 (Length: 351)

Name: NF16780_low_32
Description: NF16780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16780_low_32
NF16780_low_32
[»] chr6 (12 HSPs)
chr6 (36-335)||(31045823-31046121)
chr6 (135-205)||(31035521-31035591)
chr6 (104-196)||(31027119-31027212)
chr6 (104-205)||(31080647-31080748)
chr6 (119-205)||(31056774-31056860)
chr6 (259-333)||(31069850-31069924)
chr6 (104-197)||(31070013-31070107)
chr6 (267-323)||(31035373-31035429)
chr6 (106-205)||(31096265-31096364)
chr6 (136-197)||(31110543-31110604)
chr6 (280-331)||(31080494-31080545)
chr6 (259-312)||(31110404-31110457)
[»] scaffold0018 (1 HSPs)
scaffold0018 (94-336)||(170668-170905)
[»] scaffold0202 (1 HSPs)
scaffold0202 (112-205)||(4961-5054)


Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 36 - 335
Target Start/End: Complemental strand, 31046121 - 31045823
Alignment:
Q  36 aaatgcaatcacttgtaatcaataacatcacc-acaatagtgacatgatataaaaccacaacaaccatgtgagattgggtccccaactatgagataatgg 134  Q
    |||||||||||||||||||| |||||||||   |||||| ||||||||||||||||||| |||||    || ||||||||||||||||||||||||||||    
T  31046121 aaatgcaatcacttgtaatccataacatcaaatacaataatgacatgatataaaaccacgacaactgaatgtgattgggtccccaactatgagataatgg 31046022  T
Q  135 gtgatatatactcttattttatagggaaaccttcatgcctgttttaacacatactcgatgtggaacttgttatacctgaatagagaaacgaaagtctcat 234  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||  |||| ||| |||||||||| ||||    
T  31046021 gtgatatacactcttattttatagggaaatcttcatgcctgttttaacacatactcgatgtgggacttgttata--tgaagagaaaaacgaaagtttcat 31045924  T
Q  235 gtgaaggttacaagagaaaagcttcaatatataaaggaaatactaatccaattccaaatcaaacaagttgcaggaaggtttatctctctcacacacattt 334  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  31045923 gtgaaggttacaagagaaaagcttcaatatataaaggaaatactaatccaattccaaatccaacaagttgcaggaaggtttatctctctctcacacattt 31045824  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 135 - 205
Target Start/End: Complemental strand, 31035591 - 31035521
Alignment:
Q  135 gtgatatatactcttattttatagggaaaccttcatgcctgttttaacacatactcgatgtggaacttgtt 205  Q
    |||||||| |||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  31035591 gtgatatacactcttcttttataggaaaaccttcatgactgttttaacacatactcgatgtggaacttgtt 31035521  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 104 - 196
Target Start/End: Complemental strand, 31027212 - 31027119
Alignment:
Q  104 tgagattg-ggtccccaactatgagataatgggtgatatatactcttattttatagggaaaccttcatgcctgttttaacacatactcgatgtg 196  Q
    |||||||| |||||||||||||||   ||| ||||||||| |||||||||||||||| ||||||   |||||||||||||||||||||||||||    
T  31027212 tgagattgtggtccccaactatgactaaattggtgatatacactcttattttataggtaaacctctgtgcctgttttaacacatactcgatgtg 31027119  T

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Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 104 - 205
Target Start/End: Complemental strand, 31080748 - 31080647
Alignment:
Q  104 tgagattgggtccccaactatgagataatgggtgatatatactcttattttatagggaaaccttcatgcctgttttaacacatactcgatgtggaacttg 203  Q
    |||||||| ||| ||||||||||| | ||  || ||||| |||||||||||||||| |||||||| ||| ||||||||||||||||| |||||| |||||    
T  31080748 tgagattgagtctccaactatgagttgataagttatatacactcttattttataggtaaaccttcgtgcatgttttaacacatactctatgtgggacttg 31080649  T
Q  204 tt 205  Q
    ||    
T  31080648 tt 31080647  T

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Target: chr6; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 119 - 205
Target Start/End: Complemental strand, 31056860 - 31056774
Alignment:
Q  119 aactatgagataatgggtgatatatactcttattttatagggaaaccttcatgcctgttttaacacatactcgatgtggaacttgtt 205  Q
    ||||||||| ||||   ||||||| | |||||||||||| | |||||||| |||||||||||||||||||||||||||| |||||||    
T  31056860 aactatgagttaatatttgatatacaatcttattttatatgtaaaccttcctgcctgttttaacacatactcgatgtgggacttgtt 31056774  T

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Target: chr6; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 259 - 333
Target Start/End: Complemental strand, 31069924 - 31069850
Alignment:
Q  259 caatatataaaggaaatactaatccaattccaaatcaaacaagttgcaggaaggtttatctctctcacacacatt 333  Q
    |||||| | ||| ||||||||||||||||||||||| |||||||| ||||||||| |||||||| ||||||||||    
T  31069924 caatatctgaagcaaatactaatccaattccaaatccaacaagtttcaggaaggtctatctctcacacacacatt 31069850  T

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Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 197
Target Start/End: Complemental strand, 31070107 - 31070013
Alignment:
Q  104 tgagattgg-gtccccaactatgagataatgggtgatatatactcttattttatagggaaaccttcatgcctgttttaacacatactcgatgtgg 197  Q
    ||||||||| ||||||||||||||  |||| ||||||||| |||||||||||||||| ||| |||  || ||||||| |||||| ||||||||||    
T  31070107 tgagattggagtccccaactatgacttaattggtgatatacactcttattttataggtaaatctttctgactgttttgacacatcctcgatgtgg 31070013  T

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Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 267 - 323
Target Start/End: Complemental strand, 31035429 - 31035373
Alignment:
Q  267 aaaggaaatactaatccaattccaaatcaaacaagttgcaggaaggtttatctctct 323  Q
    ||||||||||||||| |||||||||||| |||||||| ||||||||| |||||||||    
T  31035429 aaaggaaatactaattcaattccaaatccaacaagtttcaggaaggtctatctctct 31035373  T

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Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 205
Target Start/End: Original strand, 31096265 - 31096364
Alignment:
Q  106 agattgggtccccaactatgagataatgggtgatatatactcttattttatagggaaaccttcatgcctgttttaacacatactcgatgtggaacttgtt 205  Q
    |||||||||||||||||||| | ||||  ||||| || |||||||||||||| | ||| |||  ||||| |||||||  ||||||||||||| |||||||    
T  31096265 agattgggtccccaactatgtgttaataagtgatgtacactcttattttataagtaaaacttagtgcctattttaacgtatactcgatgtgggacttgtt 31096364  T

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Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 197
Target Start/End: Complemental strand, 31110604 - 31110543
Alignment:
Q  136 tgatatatactcttattttatagggaaaccttcatgcctgttttaacacatactcgatgtgg 197  Q
    ||||||| || ||||||||||||| |||| ||||| | ||||||||||||||||||||||||    
T  31110604 tgatatacacccttattttataggtaaacattcatacatgttttaacacatactcgatgtgg 31110543  T

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Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 280 - 331
Target Start/End: Complemental strand, 31080545 - 31080494
Alignment:
Q  280 atccaattccaaatcaaacaagttgcaggaaggtttatctctctcacacaca 331  Q
    ||||||||||||||| |||||| || | ||||||||||||||||||||||||    
T  31080545 atccaattccaaatccaacaagctgtacgaaggtttatctctctcacacaca 31080494  T

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Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 259 - 312
Target Start/End: Complemental strand, 31110457 - 31110404
Alignment:
Q  259 caatatataaaggaaatactaatccaattccaaatcaaacaagttgcaggaagg 312  Q
    |||||| |||||||||||||||| |||||||||||| ||||||  |||||||||    
T  31110457 caatatctaaaggaaatactaattcaattccaaatccaacaagcagcaggaagg 31110404  T

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Target: scaffold0018 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 94 - 336
Target Start/End: Original strand, 170668 - 170905
Alignment:
Q  94 aacaaccatgtgagattgggtccccaactatgagataatgggtgatatatactcttattttatagggaaaccttcatgcctgttttaacacatactcgat 193  Q
    ||||||| | |||||||||||||||||||||| | ||||  |||||| | |||||||||||||||| |||||||| |   |||||||||| |||||||||    
T  170668 aacaaccgtatgagattgggtccccaactatgggttaataagtgatacacactcttattttataggtaaaccttcttctatgttttaacatatactcgat 170767  T
Q  194 gtggaacttg---ttatacctgaatagagaaacgaaagtctcatgtgaaggttacaagagaa----aagcttcaatatataaaggaaatactaatccaat 286  Q
    |||| |||||   |||| || ||| ||| |||| ||||||||||||||||||||||||||||    |||||||||||| ||||||            |||    
T  170768 gtgggacttgttattatgcccgaagagaaaaaccaaagtctcatgtgaaggttacaagagaagaagaagcttcaatatctaaagg------------aat 170855  T
Q  287 tccaaatcaaacaagttgcaggaaggtttatctctctcacacacatttat 336  Q
    |||||||| |||||| ||||| |||||||||||||||| |||| ||||||    
T  170856 tccaaatccaacaagctgcagaaaggtttatctctctcgcacatatttat 170905  T

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Target: scaffold0202 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 112 - 205
Target Start/End: Original strand, 4961 - 5054
Alignment:
Q  112 ggtccccaactatgagataatgggtgatatatactcttattttatagggaaaccttcatgcctgttttaacacatactcgatgtggaacttgtt 205  Q
    |||||||||||||||| ||||  |||||||| |||||||||||||||  ||||||   |||||||||||||  |||||| |||||| |||||||    
T  4961 ggtccccaactatgagttaataagtgatatacactcttattttatagataaacctcagtgcctgttttaacgtatactctatgtgggacttgtt 5054  T

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