View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16780_low_35 (Length: 335)
Name: NF16780_low_35
Description: NF16780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16780_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 196 - 317
Target Start/End: Original strand, 5050845 - 5050966
Alignment:
| Q |
196 |
tatatatatttctaatgaaatgaaacccatgacaatgtttggtttgcttgacaaaagttacatgaattgacttgaggcaaccaaacggcacatactcaca |
295 |
Q |
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| T |
5050845 |
tatatatatttctaatgaaatgaaacccatgacaatgtttggtttgcttgacaaaagttacatgaattgacttgaggcaaccaaacggcacatactcaca |
5050944 |
T |
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| Q |
296 |
aataaaattgggtggtacaaag |
317 |
Q |
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| T |
5050945 |
aataaaattgggtggtacaaag |
5050966 |
T |
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Target: chr5; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 5050629 - 5050742
Alignment:
| Q |
17 |
gaacagagaacatgtagacaaccccaaaccggaaaaggaagattctccttttcatcacattccccagagcatggtaatggcattctttaaatttggtcca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5050629 |
gaacagagaacatgtagacaaccccaaaccggaaaaggaagattctccttttcatcacattccccagagcatggtaatggcattctttaaatttggtcca |
5050728 |
T |
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| Q |
117 |
aatttccttgccaa |
130 |
Q |
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|||||||||||||| |
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| T |
5050729 |
aatttccttgccaa |
5050742 |
T |
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