View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16780_low_37 (Length: 329)

Name: NF16780_low_37
Description: NF16780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16780_low_37
NF16780_low_37
[»] chr4 (12 HSPs)
chr4 (14-318)||(42468485-42468790)
chr4 (14-318)||(42470814-42471119)
chr4 (14-295)||(45162038-45162318)
chr4 (14-295)||(45166930-45167210)
chr4 (14-295)||(50855817-50856086)
chr4 (14-227)||(19429122-19429334)
chr4 (14-154)||(13774151-13774290)
chr4 (80-295)||(8739251-8739467)
chr4 (14-154)||(13776449-13776587)
chr4 (92-217)||(43179576-43179710)
chr4 (257-318)||(45161982-45162046)
chr4 (257-318)||(45166874-45166938)
[»] chr7 (24 HSPs)
chr7 (14-295)||(3932574-3932853)
chr7 (14-295)||(3934813-3935092)
chr7 (14-295)||(8733541-8733819)
chr7 (14-294)||(36464259-36464547)
chr7 (14-295)||(8414536-8414815)
chr7 (77-295)||(19786622-19786840)
chr7 (77-295)||(19788928-19789146)
chr7 (16-295)||(3052059-3052341)
chr7 (14-295)||(42678617-42678903)
chr7 (14-154)||(8731222-8731359)
chr7 (80-154)||(28610350-28610424)
chr7 (14-131)||(18395337-18395451)
chr7 (14-64)||(16496999-16497049)
chr7 (14-64)||(16535181-16535231)
chr7 (14-64)||(16630431-16630481)
chr7 (14-123)||(21769115-21769220)
chr7 (152-202)||(19094042-19094092)
chr7 (14-74)||(19786860-19786920)
chr7 (14-74)||(19789166-19789226)
chr7 (259-295)||(3051999-3052035)
chr7 (259-295)||(8414839-8414875)
chr7 (256-318)||(3932518-3932583)
chr7 (256-318)||(3934757-3934822)
chr7 (259-294)||(36464572-36464607)
[»] chr1 (13 HSPs)
chr1 (14-295)||(29833122-29833400)
chr1 (14-295)||(734623-734903)
chr1 (14-295)||(2403881-2404152)
chr1 (14-170)||(29833856-29834000)
chr1 (14-291)||(8933595-8933878)
chr1 (14-154)||(10911352-10911489)
chr1 (14-154)||(10909108-10909246)
chr1 (14-157)||(2410003-2410136)
chr1 (14-154)||(13011698-13011835)
chr1 (77-231)||(18353733-18353889)
chr1 (259-295)||(734927-734963)
chr1 (232-295)||(2416660-2416723)
chr1 (259-295)||(29833424-29833460)
[»] chr8 (9 HSPs)
chr8 (14-318)||(4876825-4877130)
chr8 (14-318)||(4879153-4879458)
chr8 (14-318)||(24519199-24519505)
chr8 (14-295)||(36379511-36379792)
chr8 (14-295)||(36377226-36377507)
chr8 (14-295)||(21268166-21268454)
chr8 (259-318)||(21268478-21268540)
chr8 (259-295)||(36379816-36379852)
chr8 (259-295)||(36377531-36377567)
[»] chr5 (15 HSPs)
chr5 (16-295)||(37207731-37207999)
chr5 (14-295)||(11849963-11850232)
chr5 (14-295)||(11852221-11852490)
chr5 (14-294)||(22600772-22601041)
chr5 (14-295)||(23164300-23164565)
chr5 (14-217)||(37215400-37215592)
chr5 (14-295)||(1779263-1779550)
chr5 (259-318)||(37207645-37207707)
chr5 (63-154)||(21743622-21743712)
chr5 (259-295)||(23164589-23164625)
chr5 (80-120)||(1779181-1779221)
chr5 (259-295)||(22600711-22600747)
chr5 (14-60)||(21743705-21743751)
chr5 (259-295)||(11850256-11850292)
chr5 (259-295)||(11852514-11852550)
[»] chr2 (14 HSPs)
chr2 (14-295)||(31486742-31487023)
chr2 (14-295)||(31489026-31489307)
chr2 (35-210)||(29801924-29802096)
chr2 (14-154)||(42275602-42275739)
chr2 (14-154)||(42277828-42277965)
chr2 (80-230)||(34576700-34576860)
chr2 (80-217)||(23859931-23860077)
chr2 (14-74)||(5164197-5164256)
chr2 (14-60)||(8995116-8995162)
chr2 (259-295)||(31486682-31486718)
chr2 (259-295)||(31488966-31489002)
chr2 (14-55)||(15730012-15730053)
chr2 (152-210)||(8995229-8995287)
chr2 (78-119)||(8995169-8995210)
[»] scaffold0599 (1 HSPs)
scaffold0599 (14-191)||(1579-1755)
[»] chr3 (6 HSPs)
chr3 (14-154)||(4530835-4530974)
chr3 (14-148)||(4533138-4533271)
chr3 (80-233)||(18966221-18966374)
chr3 (154-229)||(1701104-1701179)
chr3 (250-295)||(39578242-39578287)
chr3 (155-211)||(8535522-8535578)
[»] scaffold0050 (2 HSPs)
scaffold0050 (83-233)||(29261-29410)
scaffold0050 (63-233)||(31574-31744)
[»] scaffold0008 (2 HSPs)
scaffold0008 (14-77)||(88422-88485)
scaffold0008 (257-318)||(73080-73144)
[»] chr6 (1 HSPs)
chr6 (88-295)||(21199148-21199374)
[»] scaffold1361 (1 HSPs)
scaffold1361 (14-109)||(1-94)


Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 14 - 318
Target Start/End: Original strand, 42468485 - 42468790
Alignment:
Q  14 aatattctcaaagaaaagttatattacttgaatgcttcaatgcttgatgatgcttgagtatgcccaaaacactaggtggtgagccttatttatactacta 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||| |||||||||||||||||||||||     
T  42468485 aatattctcaaagaaaagttatattacttgaatgcttcaatgcttgatgatgcttcagtat--ccaaaacactagatggtgagccttatttatactactc 42468582  T
Q  114 taggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagacatggatactctagtacataagcctagaaggatctagaaaagt 213  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  42468583 taggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagt 42468682  T
Q  214 taagtcttccctagtgcttatttagtagtgtctagtaactttcatattattccctagtattctagagtcttccatatta---ttcaccattctagagact 310  Q
    |||| |||||||||||||||||||||||| ||||||| ||| | |||||||||| ||||||||||||||||||||||||   ||||||||||||||||||    
T  42468683 taagacttccctagtgcttatttagtagtatctagtagcttccttattattccccagtattctagagtcttccatattattcttcaccattctagagact 42468782  T
Q  311 tccatatt 318  Q
    ||||||||    
T  42468783 tccatatt 42468790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 14 - 318
Target Start/End: Original strand, 42470814 - 42471119
Alignment:
Q  14 aatattctcaaagaaaagttatattacttgaatgcttcaatgcttgatgatgcttgagtatgcccaaaacactaggtggtgagccttatttatactacta 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||| |||||||||||||||||||||||     
T  42470814 aatattctcaaagaaaagttatattacttgaatgcttcaatgcttgatgatgcttcagtat--ccaaaacactagatggtgagccttatttatactactc 42470911  T
Q  114 taggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagacatggatactctagtacataagcctagaaggatctagaaaagt 213  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  42470912 taggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagt 42471011  T
Q  214 taagtcttccctagtgcttatttagtagtgtctagtaactttcatattattccctagtattctagagtcttccatatta---ttcaccattctagagact 310  Q
    |||| |||||||||||||||||||||||| ||||||| ||| | |||||||||| ||||||||||||||||||||||||   ||||||||||||||||||    
T  42471012 taagacttccctagtgcttatttagtagtatctagtagcttccttattattcccaagtattctagagtcttccatattattcttcaccattctagagact 42471111  T
Q  311 tccatatt 318  Q
    ||||||||    
T  42471112 tccatatt 42471119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 14 - 295
Target Start/End: Complemental strand, 45162318 - 45162038
Alignment:
Q  14 aatattctcaaagaaaagttatattacttgaatgcttcaatgcttgatgatgcttgagtatgcccaaaacactaggtggtgagccttatttatactacta 113  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |     
T  45162318 aatattctcaaagaaaagttatattacttgaatgattcaatgtttgatgatgcttgagtatgcc-aaaacactaggtggtgagccttatttatactattc 45162220  T
Q  114 taggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagacatggatactctagtacataagcctagaaggatctagaaaagt 213  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  45162219 taggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatactctagtacataaacctagaaggatctagaaaagt 45162120  T
Q  214 taagtcttccctagtgcttatttagtagtgtctagtaactttcatattattccctagtattctagagtcttccatattattc 295  Q
     ||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| || |||| |||||||||    
T  45162119 aaagacttccctagtgcttatttagtagtgtctagtagctttcttattattccctagtattctaaagacttctatattattc 45162038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 14 - 295
Target Start/End: Complemental strand, 45167210 - 45166930
Alignment:
Q  14 aatattctcaaagaaaagttatattacttgaatgcttcaatgcttgatgatgcttgagtatgcccaaaacactaggtggtgagccttatttatactacta 113  Q
    |||||||| ||| ||||||||||||| ||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |     
T  45167210 aatattcttaaaaaaaagttatattatttgaatgattcaatgtttgatgatgcttgagtatgcc-aaaacactaggtggtgagccttatttatactattc 45167112  T
Q  114 taggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagacatggatactctagtacataagcctagaaggatctagaaaagt 213  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  45167111 taggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatactctagtacataaacctagaaggatctagaaaagt 45167012  T
Q  214 taagtcttccctagtgcttatttagtagtgtctagtaactttcatattattccctagtattctagagtcttccatattattc 295  Q
     ||| |||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||| || |||| |||||||||    
T  45167011 aaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattctaaagacttctatattattc 45166930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 14 - 295
Target Start/End: Original strand, 50855817 - 50856086
Alignment:
Q  14 aatattctcaaagaaaagttatattacttgaatgcttcaatgcttgatgatgcttgagtatgcccaaaacactaggtggtgagccttatttatactacta 113  Q
    ||||||||| | |||||||||||||||||||||| ||||||||||||||||            ||||||||||||||||||| ||||||||||||||||     
T  50855817 aatattctcgaggaaaagttatattacttgaatgattcaatgcttgatgat------------ccaaaacactaggtggtgaaccttatttatactactc 50855904  T
Q  114 taggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagacatggatactctagtacataagcctagaaggatctagaaaagt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  50855905 taggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagatatggatactctggtacataagcctagaaggatctagaaaagt 50856004  T
Q  214 taagtcttccctagtgcttatttagtagtgtctagtaactttcatattattccctagtattctagagtcttccatattattc 295  Q
    |||| |||||||||||||||||||||||||||||||| ||| | ||||||||| ||||||||||||| ||||||||||||||    
T  50856005 taagacttccctagtgcttatttagtagtgtctagtagcttccttattattccatagtattctagagacttccatattattc 50856086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 14 - 227
Target Start/End: Original strand, 19429122 - 19429334
Alignment:
Q  14 aatattctcaaagaaaagt-tatattacttgaatgcttcaatgcttgatgatgcttgagtatgcccaaaacactaggtggtgagccttatttatactact 112  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||  || ||||| |||  | ||| |||| |||||||||||||||||||||||||    
T  19429122 aatattctcaaagaaaagtatatattacttgaatgattcaatgcttgagtat-cttgaatatatctaaa-cacttggtggtgagccttatttatactact 19429219  T
Q  113 ataggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagacatggatactctagtacataagcctagaaggatctagaaaag 212  Q
     |||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||  |||||||||||||||||||    
T  19429220 ctaggtaggctctccattacaaactagaaatatctataaacaaagaaaagtctagagatatgaatactctagtacataaaactagaaggatctagaaaag 19429319  T
Q  213 ttaagtcttccctag 227  Q
    | ||| |||||||||    
T  19429320 tcaagacttccctag 19429334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 14 - 154
Target Start/End: Complemental strand, 13774290 - 13774151
Alignment:
Q  14 aatattctcaaagaaaagttatattacttgaatgcttcaatgcttgatgatgcttgagtatgcccaaaacactaggtggtgagccttatttatactacta 113  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||     
T  13774290 aatattctcaaagaaaagttatattacttgaatgattcaatgcttgatgatgcttcagtatgcc-aaaacactaggtggtgagccttatttatactactc 13774192  T
Q  114 taggaaggctctccattaccaactagaaatatctagaaaca 154  Q
    |||||||||||| |||||| |||||||||||||||||||||    
T  13774191 taggaaggctctacattacaaactagaaatatctagaaaca 13774151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 80 - 295
Target Start/End: Complemental strand, 8739467 - 8739251
Alignment:
Q  80 aaacactaggtggtgagccttatttatactactataggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagacatggatac 179  Q
    ||||||| |||||| |||||| ||||||| ||| |||||||||||| |||||| |||||||||||||||||||||||||||| |||||||| |||||| |    
T  8739467 aaacacttggtggtaagccttgtttatacaactctaggaaggctctacattacaaactagaaatatctagaaacaaagaaaaatctagagatatggatgc 8739368  T
Q  180 tctagtacataagcctagaaggatctagaaaagttaagtcttccctagtgctta--tttagtagtgtctagtaactttcatattattccctagtattcta 277  Q
    |||||| |||| | |||||||||||||||||  |||||  ||||||||||| ||  |||||| |||| ||||| ||| | ||||||||  ||||||||||    
T  8739367 tctagttcatatgactagaaggatctagaaacattaagatttccctagtgcataattttagt-gtgtatagtagcttccttattattcattagtattcta 8739269  T
Q  278 gagtcttccatattattc 295  Q
    ||| | |||| |||||||    
T  8739268 gagacatccacattattc 8739251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 14 - 154
Target Start/End: Complemental strand, 13776587 - 13776449
Alignment:
Q  14 aatattctcaaa-gaaaagttatattacttgaatgcttcaatgcttgatgatgcttgagtatgcccaaaacactaggtggtgagccttatttatactact 112  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||  |  |||| | |||| ||| ||||  | ||||||||||||||||||||||    
T  13776587 aatattctcaaacgaaaagttatattacttgaatgattcaatgcttgattct--ttgaatgtgcctaaa-cacttagcggtgagccttatttatactact 13776491  T
Q  113 ataggaaggctctccattaccaactagaaatatctagaaaca 154  Q
     |||||||||||| |||||| |||||||||||||||||||||    
T  13776490 ctaggaaggctctgcattacaaactagaaatatctagaaaca 13776449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 92 - 217
Target Start/End: Complemental strand, 43179710 - 43179576
Alignment:
Q  92 gtgagccttatttatactactataggaaggctctccattaccaactagaaatatctagaaaca---------aagaaaagtctagagacatggatactct 182  Q
    |||||||| |||||||||||| ||| ||  |||| |||||| ||||||||||||||| |||||         ||||||||| ||||||||||||||||||    
T  43179710 gtgagcctaatttatactactctagaaaaactctgcattacaaactagaaatatctacaaacattgattacaaagaaaagtatagagacatggatactct 43179611  T
Q  183 agtacataagcctagaaggatctagaaaagttaag 217  Q
    ||| |||| | ||||||||||| | ||||||||||    
T  43179610 agttcatatgactagaaggatccaaaaaagttaag 43179576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 318
Target Start/End: Complemental strand, 45162046 - 45161982
Alignment:
Q  257 atattattccctagtattctagagtcttccatattattc---accattctagagacttccatatt 318  Q
    |||||||||  |||| |||||||| ||||||||||||||   |||||||||||||||||||||||    
T  45162046 atattattctttagtcttctagagacttccatattattcttcaccattctagagacttccatatt 45161982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 318
Target Start/End: Complemental strand, 45166938 - 45166874
Alignment:
Q  257 atattattccctagtattctagagtcttccatattattc---accattctagagacttccatatt 318  Q
    |||||||||  |||| |||||||| ||||||||||||||   |||||||||||||||||||||||    
T  45166938 atattattctttagtcttctagagacttccatattattcttcaccattctagagacttccatatt 45166874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 14 - 295
Target Start/End: Complemental strand, 3932853 - 3932574
Alignment:
Q  14 aatattctcaaagaaaagttatattacttgaatgcttcaatgcttgatgatgcttgagtatgcccaaaacactaggtggtgagccttatttatactacta 113  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||  |||||||||||| ||||||||||||||||||||| |     
T  3932853 aatattctcaaagaaaagttatattacttgaatgattcaatgcttgattatgcttgagtat--ccaaaacactagatggtgagccttatttatactattc 3932756  T
Q  114 taggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagacatggatactctagtacataagcctagaaggatctagaaaagt 213  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3932755 taggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagt 3932656  T
Q  214 taagtcttccctagtgcttatttagtagtgtctagtaactttcatattattccctagtattctagagtcttccatattattc 295  Q
    |||| |||||||||||||||||||||||| ||||||| ||| | ||||||||||||||||||||||||||||||||||||||    
T  3932655 taagacttccctagtgcttatttagtagtatctagtagcttccttattattccctagtattctagagtcttccatattattc 3932574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 14 - 295
Target Start/End: Complemental strand, 3935092 - 3934813
Alignment:
Q  14 aatattctcaaagaaaagttatattacttgaatgcttcaatgcttgatgatgcttgagtatgcccaaaacactaggtggtgagccttatttatactacta 113  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||  |||||||||||| ||||||||||||||||||||| |     
T  3935092 aatattctcaaagaaaagttatattacttgaatgattcaatgcttgattatgcttgagtat--ccaaaacactagatggtgagccttatttatactattc 3934995  T
Q  114 taggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagacatggatactctagtacataagcctagaaggatctagaaaagt 213  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3934994 taggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagt 3934895  T
Q  214 taagtcttccctagtgcttatttagtagtgtctagtaactttcatattattccctagtattctagagtcttccatattattc 295  Q
    |||| |||||||||||||||||||||||| ||||||| ||| | ||||||||||||||||||||||||||||||||||||||    
T  3934894 taagacttccctagtgcttatttagtagtatctagtagcttccttattattccctagtattctagagtcttccatattattc 3934813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 14 - 295
Target Start/End: Original strand, 8733541 - 8733819
Alignment:
Q  14 aatattctcaaagaaaag-ttatattacttgaatgcttcaatgcttgatgatgcttgagtatgcccaaaacactaggtggtgagccttatttatactact 112  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  8733541 aatattctcaaagaaaagattatattatttgaatgcttcaatgcttgatgattcttgagtatgcc-aaaacactaggtggtgagccttatttatactact 8733639  T
Q  113 ataggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagacatggatactctagtacataagcctagaaggatctagaaaag 212  Q
     |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8733640 ctaggaaggctctcctttacaaactagaaatatctagaaacaaagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaag 8733739  T
Q  213 ttaagtcttccctagtgcttatttagtagtgtctagtaactttcatattattccctagtattctagagtcttccatattattc 295  Q
    |||||    ||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||| |||| |||||||||    
T  8733740 ttaag---accctagtgcttatttagtagtgtctagtagcttccttattattccctagtattctagagacttctatattattc 8733819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 14 - 294
Target Start/End: Original strand, 36464259 - 36464547
Alignment:
Q  14 aatattctcaaagaaaagttatattacttgaatgcttcaatgcttgatgatgcttgagtatgc--------ccaaaacactaggtggtgagccttattta 105  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||          |||||||||||||||||||||||||||||    
T  36464259 aatattctcaaagaaaagttatattacttgaatgattcaatgcttgactatgcttgagtatcttgagtatgccaaaacactaggtggtgagccttattta 36464358  T
Q  106 tactactataggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagacatggatactctagtacataagcctagaaggatct 205  Q
    ||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||  ||||||||||||    
T  36464359 tactactctaggaaggctctccattataaactagaaatatctagaaacaaagaaaagtctggagatatggatactctagtacataaaactagaaggatct 36464458  T
Q  206 agaaaagttaagtcttccctagtgcttatttagtagtgtctagtaactttcatattattccctagtattctagagtcttccatattatt 294  Q
    |||||||| ||| |||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||| |||| ||||||||    
T  36464459 agaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattctagagacttctatattatt 36464547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 14 - 295
Target Start/End: Original strand, 8414536 - 8414815
Alignment:
Q  14 aatattctcaaagaaaagttatattacttgaatgcttcaatgcttgatgatgcttgagtatgcccaaaacactaggtggtgagccttatttatactacta 113  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||     
T  8414536 aatattctcaaagaaaagttatattatttgaatgattcaatgcttgaatatgcttgagtatgcc-aaaacactaggtggtgagccttatttatactactc 8414634  T
Q  114 taggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagacatggatactctagtacataagcctagaaggatctagaaaagt 213  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||| | ||||| ||||  |||||| |||||||||||||    
T  8414635 taggaaggctctccattacaaactagaaaaatctagaaacaaagaaaagtctagagatatggatattttagtatataaaactagaa-gatctagaaaagt 8414733  T
Q  214 taagtcttccctagtgcttatttagtagtgtctagtaactttcatattattccctagtattctagagtcttccatattattc 295  Q
     ||| ||||||||||||||||||||||||||||||||  || | ||||||||||||||||||||||| |||| |||||||||    
T  8414734 caagacttccctagtgcttatttagtagtgtctagtagtttccttattattccctagtattctagagacttctatattattc 8414815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 77 - 295
Target Start/End: Complemental strand, 19786840 - 19786622
Alignment:
Q  77 ccaaaacactaggtggtgagccttatttatactactataggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagacatgga 176  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  19786840 ccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatgga 19786741  T
Q  177 tactctagtacataagcctagaaggatctagaaaagttaagtcttccctagtgcttatttagtagtgtctagtaactttcatattattccctagtattct 276  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| | |||||||||||| ||||||    
T  19786740 tactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctaatattct 19786641  T
Q  277 agagtcttccatattattc 295  Q
    |||| |||||| |||||||    
T  19786640 agagacttccacattattc 19786622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 77 - 295
Target Start/End: Complemental strand, 19789146 - 19788928
Alignment:
Q  77 ccaaaacactaggtggtgagccttatttatactactataggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagacatgga 176  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  19789146 ccaaaacactaggtggtgagccttatttatactactctagtaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatgga 19789047  T
Q  177 tactctagtacataagcctagaaggatctagaaaagttaagtcttccctagtgcttatttagtagtgtctagtaactttcatattattccctagtattct 276  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||    
T  19789046 tactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattct 19788947  T
Q  277 agagtcttccatattattc 295  Q
    |||| |||||| |||||||    
T  19788946 agagacttccacattattc 19788928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 16 - 295
Target Start/End: Complemental strand, 3052341 - 3052059
Alignment:
Q  16 tattctcaaagaaaagttatattacttgaatgcttcaatgcttgatgatgcttgagtatgcccaaaacactaggtggtgagccttatttatactactata 115  Q
    ||||||||||||||  |||||||| ||||||||||||||||||||  || |||||||||  | |||||||||||||||||||||||||||||||||| ||    
T  3052341 tattctcaaagaaagtttatattatttgaatgcttcaatgcttgagtatacttgagtatatc-aaaacactaggtggtgagccttatttatactactcta 3052243  T
Q  116 ggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagacatggatactctagtacataagcctagaaggatctagaaaagtta 215  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||  ||||||||||||||||||||||    
T  3052242 ggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatattctagtacataaaactagaaggatctagaaaagtta 3052143  T
Q  216 agtcttccctagtgcttatttagtagtgtctagtaactttcata----ttattccctagtattctagagtcttccatattattc 295  Q
    || |||||||| ||||||||||||||||||||||| ||| | ||    |||||  |||||||||||||| |||| |||||||||    
T  3052142 agacttccctaatgcttatttagtagtgtctagtagcttccttattatttattatctagtattctagagacttctatattattc 3052059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 14 - 295
Target Start/End: Original strand, 42678617 - 42678903
Alignment:
Q  14 aatattctcaaagaaaagttatattacttgaatgcttcaatgcttgatgatgcttgagtatgcccaaaacactaggtggtgagccttatttatactacta 113  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    |||         ||||||||| ||||||||||||||||||||||||      
T  42678617 aatattctcaaagaaaagttatattacttgaatgattcaatgcttgatc---ctt---------caaaacacttggtggtgagccttatttatactacct 42678704  T
Q  114 taggaaggctctccattaccaactagaaatatctagaa---------acaaagaaaagtctagagacatggatactctagtacataagcctagaaggatc 204  Q
    | |||||| ||| |||||| |||||||| |||||||||         ||||||||| | ||||| |||||||||||||||  |||| | |||||||||||    
T  42678705 tgggaaggttctacattacaaactagaattatctagaaacattgattacaaagaaaggcctagaaacatggatactctaggtcatatgactagaaggatc 42678804  T
Q  205 tagaaaagttaagtcttccctagtgc------ttatttagt--agtgtctagtaactttcatattattccctagtattctagagtcttccatattattc 295  Q
    ||||||  |||||  || ||||||||      |||||||||  ||||||||||| ||| | ||||||||| ||||||| ||||| ||||||||||||||    
T  42678805 tagaaacattaagattttcctagtgctttattttatttagtagagtgtctagtagcttccttattattccatagtattttagagacttccatattattc 42678903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 14 - 154
Target Start/End: Original strand, 8731222 - 8731359
Alignment:
Q  14 aatattctcaaagaaaagttatattacttgaatgcttcaatgcttgatgatgcttgagtatgcccaaaacactaggtggtgagccttatttatactacta 113  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||  |  || | | |||| ||| ||||  ||||||||||||||||||||||||     
T  8731222 aatattctcaaagaaaagttatattacttgaatgattcaatgcttgattct--ttaaatgtgcctaaa-cacttagtggtgagccttatttatactactc 8731318  T
Q  114 taggaaggctctccattaccaactagaaatatctagaaaca 154  Q
    |||||||||||| |||||| || ||||||||||||||||||    
T  8731319 taggaaggctctacattacaaattagaaatatctagaaaca 8731359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 80 - 154
Target Start/End: Original strand, 28610350 - 28610424
Alignment:
Q  80 aaacactaggtggtgagccttatttatactactataggaaggctctccattaccaactagaaatatctagaaaca 154  Q
    ||||||| ||||||||||||||||||||||||| ||| |||||||| |||||| |||||||||||||||||||||    
T  28610350 aaacacttggtggtgagccttatttatactactctagaaaggctctacattacaaactagaaatatctagaaaca 28610424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 14 - 131
Target Start/End: Complemental strand, 18395451 - 18395337
Alignment:
Q  14 aatattctcaaagaaaagttatattacttgaatgcttcaatgcttgatgatgcttgagtatgcccaaaacactaggtggtgagccttatttatactacta 113  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||   |  || | | ||  | |||||||  ||||||||||||||||||||||||     
T  18395451 aatattctcaaagaaaagttatattacttgaatgattcaatgcttga--ctcttttaatgtg-tctaaacacttagtggtgagccttatttatactactc 18395355  T
Q  114 taggaaggctctccatta 131  Q
    |||||||||||| |||||    
T  18395354 taggaaggctctacatta 18395337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 16496999 - 16497049
Alignment:
Q  14 aatattctcaaagaaaagttatattacttgaatgcttcaatgcttgatgat 64  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  16496999 aatattctcaaagaaaagttatattacttaaatgattcaatgcttgatgat 16497049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 16535181 - 16535231
Alignment:
Q  14 aatattctcaaagaaaagttatattacttgaatgcttcaatgcttgatgat 64  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  16535181 aatattctcaaagaaaagttatattacttaaatgattcaatgcttgatgat 16535231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 16630481 - 16630431
Alignment:
Q  14 aatattctcaaagaaaagttatattacttgaatgcttcaatgcttgatgat 64  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  16630481 aatattctcaaagaaaagttatattacttaaatgattcaatgcttgatgat 16630431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 123
Target Start/End: Original strand, 21769115 - 21769220
Alignment:
Q  14 aatattctcaaagaaaagttatattacttgaatgcttcaatgcttgatgatgcttgagtatgcccaaaacactaggtggtgagccttatttatactacta 113  Q
    ||||||||||||||||  |  ||||| ||||||| ||||||||||||  |||||||| ||||||  ||||||  |||| ||||||||||||||||||||     
T  21769115 aatattctcaaagaaagttgttattatttgaatgtttcaatgcttga--atgcttgaatatgcc--aaacacagggtgatgagccttatttatactactc 21769210  T
Q  114 taggaaggct 123  Q
    ||| ||||||    
T  21769211 tagtaaggct 21769220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 152 - 202
Target Start/End: Original strand, 19094042 - 19094092
Alignment:
Q  152 acaaagaaaagtctagagacatggatactctagtacataagcctagaagga 202  Q
    ||||||||||||||||||||||||||||||||||  ||||| |||||||||    
T  19094042 acaaagaaaagtctagagacatggatactctagtttataagtctagaagga 19094092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 19786920 - 19786860
Alignment:
Q  14 aatattctcaaag-aaaagttatattacttgaatgcttcaatgcttgatgatgcttgagtat 74  Q
    ||||||||||||| ||||||||||||||||||||  ||||||||||||| || |||||||||    
T  19786920 aatattctcaaaggaaaagttatattacttgaatcattcaatgcttgattat-cttgagtat 19786860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 19789226 - 19789166
Alignment:
Q  14 aatattctcaaag-aaaagttatattacttgaatgcttcaatgcttgatgatgcttgagtat 74  Q
    ||||||||||||| ||||||||||||||||||||  ||||||||||||| || |||||||||    
T  19789226 aatattctcaaaggaaaagttatattacttgaatcattcaatgcttgattat-cttgagtat 19789166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 295
Target Start/End: Complemental strand, 3052035 - 3051999
Alignment:
Q  259 attattccctagtattctagagtcttccatattattc 295  Q
    ||||||| |||||||||||||||||||||||||||||    
T  3052035 attattctctagtattctagagtcttccatattattc 3051999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 295
Target Start/End: Original strand, 8414839 - 8414875
Alignment:
Q  259 attattccctagtattctagagtcttccatattattc 295  Q
    ||||||| |||||||||||||||||||||||||||||    
T  8414839 attattctctagtattctagagtcttccatattattc 8414875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 318
Target Start/End: Complemental strand, 3932583 - 3932518
Alignment:
Q  256 catattattccctagtattctagagtcttccatatta---ttcaccattctagagacttccatatt 318  Q
    ||||||||||  |||| |||||||| |||||||||||   |||| |||||||||||||||||||||    
T  3932583 catattattctttagtcttctagagacttccatattattcttcatcattctagagacttccatatt 3932518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 318
Target Start/End: Complemental strand, 3934822 - 3934757
Alignment:
Q  256 catattattccctagtattctagagtcttccatatta---ttcaccattctagagacttccatatt 318  Q
    ||||||||||  |||| |||||||| |||||||||||   |||| |||||||||||||||||||||    
T  3934822 catattattctttagtcttctagagacttccatattattcttcatcattctagagacttccatatt 3934757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 294
Target Start/End: Original strand, 36464572 - 36464607
Alignment:
Q  259 attattccctagtattctagagtcttccatattatt 294  Q
    ||||||| ||||||||||||||||||||||||||||    
T  36464572 attattctctagtattctagagtcttccatattatt 36464607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 14 - 295
Target Start/End: Original strand, 29833122 - 29833400
Alignment:
Q  14 aatattctcaaagaaaagttatattacttgaatgcttcaatgcttgatgatgcttgagtatgcccaaaacactaggtggtgagccttatttatactacta 113  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||  |||| | |||| ||||||||||||||||||||||||||||||||||     
T  29833122 aatattctcaaagaaaagttatattacttgaatgattcaatgcttgatgat--ttgaatgtgcc-aaaacactaggtggtgagccttatttatactactc 29833218  T
Q  114 taggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagacatggatactctagtacataagcctagaaggatctagaaaagt 213  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29833219 taggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctagagacatggatactctagtacataagcctagaaggatctagaaaagt 29833318  T
Q  214 taagtcttccctagtgcttatttagtagtgtctagtaactttcatattattccctagtattctagagtcttccatattattc 295  Q
    |||| |||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||| |||| |||||||||    
T  29833319 taagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattctagagacttctatattattc 29833400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 14 - 295
Target Start/End: Original strand, 734623 - 734903
Alignment:
Q  14 aatattctcaaagaaaagttatattacttgaatgcttcaatgcttgatgatgcttgagtatgcccaaaacactaggtggtgagccttatttatactacta 113  Q
    ||||||||||| |||||||||||||||||||||  ||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||| |     
T  734623 aatattctcaaggaaaagttatattacttgaatcattcaatgcttgattat-cttgagtatgaccaaaacactaggtggtgagccttatttatactattc 734721  T
Q  114 taggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagacatggatactctagtacataagcctagaaggatctagaaaagt 213  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  734722 taggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatactctagtacataaacctagaaggatctagaaaagt 734821  T
Q  214 taagtcttccctagtgcttatttagtagtgtctagtaactttcatattattccctagtattctagagtcttccatattattc 295  Q
    |||| |||||||||||||||||||||||||||||||| ||| | | ||||||||||||||||||||| |||| |||||||||    
T  734822 taagacttccctagtgcttatttagtagtgtctagtagcttccttgttattccctagtattctagagacttctatattattc 734903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 14 - 295
Target Start/End: Original strand, 2403881 - 2404152
Alignment:
Q  14 aatattctcaaagaaaag-ttatattacttgaatgcttcaatgcttgatgatgcttgagtatgcccaaaacactaggtggtgagccttatttatactact 112  Q
    |||||||||||||||||  |||||||| ||||||| ||| ||||||||||||||           |||||||||| ||||||| ||||||||||||||||    
T  2403881 aatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgc-----------caaaacactaagtggtgaaccttatttatactact 2403969  T
Q  113 ataggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagacatggatactctagtacataagcctagaaggatctagaaaag 212  Q
     ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2403970 ctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaag 2404069  T
Q  213 ttaagtcttccctagtgcttatttagtagtgtctagtaactttcatattattccctagtattctagagtcttccatattattc 295  Q
    ||||| |||||||||||||||||||||||| ||||||| ||| | ||||||||||||||||||||||| |||| |||||||||    
T  2404070 ttaagacttccctagtgcttatttagtagtatctagtagcttccttattattccctagtattctagagacttctatattattc 2404152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 14 - 170
Target Start/End: Complemental strand, 29834000 - 29833856
Alignment:
Q  14 aatattctcaaagaaaagttatattacttgaatgcttcaatgcttgatgatgcttgagtatgcccaaaacactaggtggtgagccttatttatactacta 113  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||| ||            |||||||||||||| |||||||||||||||||||||     
T  29834000 aatattctcaaagaaaagttatattacttgaaggattcaatgcttgatcat------------ccaaaacactaggtagtgagccttatttatactactc 29833913  T
Q  114 taggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagaga 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29833912 taggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagaga 29833856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 14 - 291
Target Start/End: Original strand, 8933595 - 8933878
Alignment:
Q  14 aatattctcaaagaaaagttatattacttgaatgcttcaatgcttgatgatgcttgagtatgcccaaaacactaggtggtgagccttatttatactacta 113  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||    ||||        |||||||||  ||||||||||||||||||||||||     
T  8933595 aatattttcaaagaaaagttatattacttgaatgattcaatgcttgatt---cttg--------caaaacacttagtggtgagccttatttatactactc 8933683  T
Q  114 taggaaggctctccattaccaactagaaatatctagaa---------acaaagaaaagtctagagacatggatactctagtacataagcctagaaggatc 204  Q
    |||||||| ||| |||||| |||||||| |||||||||         ||||||||| | ||||| |||||||||||||||| |||| | |||||||||||    
T  8933684 taggaaggttctacattacaaactagaattatctagaaacattgattacaaagaaaggcctagaaacatggatactctagttcatatgactagaaggatc 8933783  T
Q  205 tagaaaagttaagtcttccctagtgc------ttatttagt--agtgtctagtaactttcatattattccctagtattctagagtcttccatatt 291  Q
    ||||||  |||||  || ||||||||      |||||||||  |||||||| || ||| | ||||||||| ||||||| ||||| ||||||||||    
T  8933784 tagaaacattaagattttcctagtgctttattttatttagtagagtgtctaatagcttccttattattccatagtattttagagacttccatatt 8933878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 14 - 154
Target Start/End: Complemental strand, 10911489 - 10911352
Alignment:
Q  14 aatattctcaaagaaaagttatattacttgaatgcttcaatgcttgatgatgcttgagtatgcccaaaacactaggtggtgagccttatttatactacta 113  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||  |  |||| | |||| ||| ||||  ||||||||||||||||||||||||     
T  10911489 aatattctcaaagaaaagttatattacttgaatgattcaatgcttgattct--ttgaatgtgcctaaa-cacttagtggtgagccttatttatactactc 10911393  T
Q  114 taggaaggctctccattaccaactagaaatatctagaaaca 154  Q
    |||||||| ||| |||||| |||||||||||||||||||||    
T  10911392 taggaagggtctacattacaaactagaaatatctagaaaca 10911352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 14 - 154
Target Start/End: Complemental strand, 10909246 - 10909108
Alignment:
Q  14 aatattctcaaa-gaaaagttatattacttgaatgcttcaatgcttgatgatgcttgagtatgcccaaaacactaggtggtgagccttatttatactact 112  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||  |  |||| | |||| ||| ||||  ||||||||||||||||||||||||    
T  10909246 aatattctcaaacgaaaagttatattacttgaatgattcaatgcttgattct--ttgaatgtgcctaaa-cacttagtggtgagccttatttatactact 10909150  T
Q  113 ataggaaggctctccattaccaactagaaatatctagaaaca 154  Q
     |||||||||||| |||||| |||||||||||||||||||||    
T  10909149 ctaggaaggctctacattacaaactagaaatatctagaaaca 10909108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 14 - 157
Target Start/End: Original strand, 2410003 - 2410136
Alignment:
Q  14 aatattctcaaagaaaag-ttatattacttgaatgcttcaatgcttgatgatgcttgagtatgcccaaaacactaggtggtgagccttatttatactact 112  Q
    |||||||||||||||||  |||||||| ||||||| ||| ||||||||||||||           |||||||||||||||||||||||||||||||||||    
T  2410003 aatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgc-----------caaaacactaggtggtgagccttatttatactact 2410091  T
Q  113 ataggaaggctctccattaccaactagaaatatctagaaacaaag 157  Q
     ||||||||||||||||||| || ||| |||||||||||||||||    
T  2410092 ctaggaaggctctccattacaaattagcaatatctagaaacaaag 2410136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 14 - 154
Target Start/End: Complemental strand, 13011835 - 13011698
Alignment:
Q  14 aatattctcaaagaaaagttatattacttgaatgcttcaatgcttgatgatgcttgagtatgcccaaaacactaggtggtgagccttatttatactacta 113  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||  |  |||| | || | ||| ||||  ||||||||||||||||||||||||     
T  13011835 aatattctcaaagaaaagttatattatttgaatgattcaatgcttgattct--ttgaatgtgtctaaa-cacttagtggtgagccttatttatactactc 13011739  T
Q  114 taggaaggctctccattaccaactagaaatatctagaaaca 154  Q
    |||||||||||| |||||  ||||| |||||||||||||||    
T  13011738 taggaaggctctacattaaaaactaaaaatatctagaaaca 13011698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 231
Target Start/End: Complemental strand, 18353889 - 18353733
Alignment:
Q  77 ccaaaacactaggtggtgagccttatttatactactataggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtct--agagacatg 174  Q
    |||||||||| || |||||||| || |||||||||| ||| || ||||  |||||| || |||||| |||||||||||  ||  ||     | |||||||    
T  18353889 ccaaaacacttggaggtgagccctaattatactactctagtaatgctccacattacaaaatagaaagatctagaaacattgattagaaataaaagacatg 18353790  T
Q  175 gatactctagtacataagcctagaaggatctagaaaagttaagtcttccctagtgct 231  Q
    ||||||||||| |||| | ||||||||||||||||||| ||||  || |||||||||    
T  18353789 gatactctagttcatatgactagaaggatctagaaaagataagattttcctagtgct 18353733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 259 - 295
Target Start/End: Original strand, 734927 - 734963
Alignment:
Q  259 attattccctagtattctagagtcttccatattattc 295  Q
    |||||||||||||||||||||||||||||||||||||    
T  734927 attattccctagtattctagagtcttccatattattc 734963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 295
Target Start/End: Original strand, 2416660 - 2416723
Alignment:
Q  232 tatttagtagtgtctagtaactttcatattattccctagtattctagagtcttccatattattc 295  Q
    ||||||||||| ||||||| ||| | |||||||||||||||||||||||  ||| |||||||||    
T  2416660 tatttagtagtatctagtagcttccttattattccctagtattctagagagttctatattattc 2416723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 295
Target Start/End: Original strand, 29833424 - 29833460
Alignment:
Q  259 attattccctagtattctagagtcttccatattattc 295  Q
    ||||||| |||||||||||||||||||||||||||||    
T  29833424 attattctctagtattctagagtcttccatattattc 29833460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 14 - 318
Target Start/End: Complemental strand, 4877130 - 4876825
Alignment:
Q  14 aatattctcaaagaaaagttatattacttgaatgcttcaatgcttgatgatgcttgagtatgcccaaaacactaggtggtgagccttatttatactacta 113  Q
    ||||||||||| |||||||||||||||||||||  ||||||||||||| || |||||||||| | |||||||||| |||||||||||||||||||||||     
T  4877130 aatattctcaaggaaaagttatattacttgaatcattcaatgcttgattat-cttgagtatgtc-aaaacactagatggtgagccttatttatactactc 4877033  T
Q  114 taggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagacatggatactctagtacataagcctagaaggatctagaaaagt 213  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  4877032 taggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatactatagtacataagcctagaaggatctagaaaagt 4876933  T
Q  214 taagtcttccctagtgcttatttagtagtgtctagtaactttcatattattccctagtattctagagtcttccatatta---ttcaccattctagagact 310  Q
    |||| |||||||||||||||||||||||| ||||||| ||| | |||||||||| ||||||||||||||||||||||||   ||||||||||||||||||    
T  4876932 taagacttccctagtgcttatttagtagtttctagtagcttccttattattccccagtattctagagtcttccatattattcttcaccattctagagact 4876833  T
Q  311 tccatatt 318  Q
    ||||||||    
T  4876832 tccatatt 4876825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 14 - 318
Target Start/End: Complemental strand, 4879458 - 4879153
Alignment:
Q  14 aatattctcaaagaaaagttatattacttgaatgcttcaatgcttgatgatgcttgagtatgcccaaaacactaggtggtgagccttatttatactacta 113  Q
    ||||||||||| |||||||||||||||||||||  ||||||||||||| || |||||||||| | |||||||||| |||||||||||||||||||||||     
T  4879458 aatattctcaaggaaaagttatattacttgaatcattcaatgcttgattat-cttgagtatgtc-aaaacactagatggtgagccttatttatactactc 4879361  T
Q  114 taggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagacatggatactctagtacataagcctagaaggatctagaaaagt 213  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  4879360 taggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatactatagtacataagcctagaaggatctagaaaagt 4879261  T
Q  214 taagtcttccctagtgcttatttagtagtgtctagtaactttcatattattccctagtattctagagtcttccatatta---ttcaccattctagagact 310  Q
    |||| |||||||||||||||||||||||| ||||||| ||| | |||||||||| ||||||||||||||||||||||||   ||||||||||||||||||    
T  4879260 taagacttccctagtgcttatttagtagtttctagtagcttccttattattccccagtattctagagtcttccatattattcttcaccattctagagact 4879161  T
Q  311 tccatatt 318  Q
    ||||||||    
T  4879160 tccatatt 4879153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 14 - 318
Target Start/End: Original strand, 24519199 - 24519505
Alignment:
Q  14 aatattctcaaagaaaagttatattacttgaatgcttcaatgcttgatgatgcttgagtatgcccaaaacactaggtggtgagccttatttatactacta 113  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||| |||||| |||||||| |||||||||| |||||||||||||||||||||||     
T  24519199 aatattctctaagaaaagttatattacttgaatgattcaatgcttgattatgcttcagtatgcc-aaaacactagatggtgagccttatttatactactc 24519297  T
Q  114 taggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagacatggatactctagtacataagcctagaaggatctagaaaagt 213  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||    
T  24519298 taggaaggctctccattataaactagaaatatctagaaacaaagaaaagtctagagatatggatacttttgtacataagcctagaaggatctagaaaagt 24519397  T
Q  214 taagtcttccctagtgcttatttagtagtgtctagtaactttcatattattccctagtattctagagtcttccatatta---ttcaccattctagagact 310  Q
    |||| |||||||||||||||||||||||| ||| ||| ||| | |||||||||| ||||||||||||||||||||||||   ||||||||||||||||||    
T  24519398 taagacttccctagtgcttatttagtagtatctggtagcttccttattattccccagtattctagagtcttccatattattcttcaccattctagagact 24519497  T
Q  311 tccatatt 318  Q
    ||||||||    
T  24519498 tccatatt 24519505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 14 - 295
Target Start/End: Original strand, 36379511 - 36379792
Alignment:
Q  14 aatattctcaaag-aaaagttatattacttgaatgcttcaatgcttgatgatgcttgagtatgcccaaaaca-ctaggtggtgagccttatttatactac 111  Q
    ||||||||||||| ||||||||||||||||||||  ||||||||||||| || |||||||||| |||||||| | |||||||||||||||||||||||||    
T  36379511 aatattctcaaaggaaaagttatattacttgaatcattcaatgcttgattat-cttgagtatg-ccaaaacacccaggtggtgagccttatttatactac 36379608  T
Q  112 tataggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagacatggatactctagtacataagcctagaaggatctagaaaa 211  Q
    | ||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  36379609 tctaggaaggctctccattacaaactagaaatatctggaaacaaagaaaagtccagagatatggatactctagtacataagcctagaaggatctagaaaa 36379708  T
Q  212 gttaagtcttccctagtgcttatttagtagtgtctagtaactttcatattattccctagtattctagagtcttccatattattc 295  Q
    |||||| |||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||| |||| |||||||||    
T  36379709 gttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattctagagacttctatattattc 36379792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 14 - 295
Target Start/End: Original strand, 36377226 - 36377507
Alignment:
Q  14 aatattctcaaag-aaaagttatattacttgaatgcttcaatgcttgatgatgcttgagtatgcccaaaacact-aggtggtgagccttatttatactac 111  Q
    ||||||||||||| ||||||||||||||||||||  ||||||||||||| ||  ||||||||||| |||||||| |||||||||||||||||||||||||    
T  36377226 aatattctcaaaggaaaagttatattacttgaatcattcaatgcttgattatt-ttgagtatgcc-aaaacacttaggtggtgagccttatttatactac 36377323  T
Q  112 tataggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagacatggatactctagtacataagcctagaaggatctagaaaa 211  Q
    | ||||||||||||||||||| || |||||||||||  ||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||    
T  36377324 tctaggaaggctctccattacaaagtagaaatatctgaaaacaaagaaaagttcagagatatggatactctagtacataagcctagaaggatctagaaaa 36377423  T
Q  212 gttaagtcttccctagtgcttatttagtagtgtctagtaactttcatattattccctagtattctagagtcttccatattattc 295  Q
    |||||| |||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||| |||| |||||||||    
T  36377424 gttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattctagagacttctatattattc 36377507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 14 - 295
Target Start/End: Original strand, 21268166 - 21268454
Alignment:
Q  14 aatattctcaaag-aaaagttatattacttgaatgcttcaatgcttgatgatgcttgagtatgc--------ccaaaacactaggtggtgagccttattt 104  Q
    ||||||||||||| ||||||||||||||||||||  ||||||||||||| || |||||||||          || ||||||||||| |||||||||||||    
T  21268166 aatattctcaaaggaaaagttatattacttgaatcattcaatgcttgattat-cttgagtatttggattatgcctaaacactaggtagtgagccttattt 21268264  T
Q  105 atactactataggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagacatggatactctagtacataagcctagaaggatc 204  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||  |||||||||||    
T  21268265 atactactctaggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatactttagtacataaaactagaaggatc 21268364  T
Q  205 tagaaaagttaagtcttccctagtgcttatttagtagtgtctagtaactttcatattattccctagtattctagagtcttccatattattc 295  Q
    ||||||||| ||| ||||||||||  |||||||||||||||||||| ||| | ||||||||||||||||||||||| |||| |||||||||    
T  21268365 tagaaaagtcaagacttccctagt-tttatttagtagtgtctagtagcttccttattattccctagtattctagagacttctatattattc 21268454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 259 - 318
Target Start/End: Original strand, 21268478 - 21268540
Alignment:
Q  259 attattccctagtattctagagtcttccatatta---ttcaccattctagagacttccatatt 318  Q
    ||||||| ||||||||||||||||||||||||||   ||||||||||||||||||||||||||    
T  21268478 attattctctagtattctagagtcttccatattattcttcaccattctagagacttccatatt 21268540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 259 - 295
Target Start/End: Original strand, 36379816 - 36379852
Alignment:
Q  259 attattccctagtattctagagtcttccatattattc 295  Q
    |||||||||||||||||||||||||||||||||||||    
T  36379816 attattccctagtattctagagtcttccatattattc 36379852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 295
Target Start/End: Original strand, 36377531 - 36377567
Alignment:
Q  259 attattccctagtattctagagtcttccatattattc 295  Q
    |||||||| ||||||||||||||||||||||||||||    
T  36377531 attattccttagtattctagagtcttccatattattc 36377567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 16 - 295
Target Start/End: Complemental strand, 37207999 - 37207731
Alignment:
Q  16 tattctcaaagaaaag-ttatattacttgaatgcttcaatgcttgatgatgcttgagtatgcccaaaacactaggtggtgagccttatttatactactat 114  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||| |    
T  37207999 tattctcaaagaaaagattatattatttgaatgcttcaatgcttgatgatgc------------aaaacactaggtggtgagccttatttatactactct 37207912  T
Q  115 aggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagacatggatactctagtacataagcctagaaggatctagaaaagtt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37207911 aggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagacatggatactctagtacataagcctagaaggatctagaaaagtt 37207812  T
Q  215 aagtcttccctagtgcttatttagtagtgtctagtaactttcatattattccctagtattctagagtcttccatattattc 295  Q
    ||| |||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||| || |||| |||||||||    
T  37207811 aagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattctacagacttctatattattc 37207731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 14 - 295
Target Start/End: Original strand, 11849963 - 11850232
Alignment:
Q  14 aatattctcaaagaaaagttatattacttgaatgcttcaatgcttgatgatgcttgagtatgcccaaaacactaggtggtgagccttatttatactacta 113  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||            ||||||||||||||||||||||||||||||||||||     
T  11849963 aatattctcaaagaaaagttatattatttgaatgattcaatgcttgatgat------------ccaaaacactaggtggtgagccttatttatactactc 11850050  T
Q  114 taggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagacatggatactctagtacataagcctagaaggatctagaaaagt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |    
T  11850051 taggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagatatggatactcttgtacataagcctagaaggatctagaaaatt 11850150  T
Q  214 taagtcttccctagtgcttatttagtagtgtctagtaactttcatattattccctagtattctagagtcttccatattattc 295  Q
    |||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| |||| |||||||||    
T  11850151 taagacttccctagtgcttatttagtagtgtctagtagctttcttattattccctagtattttagagacttctatattattc 11850232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 14 - 295
Target Start/End: Original strand, 11852221 - 11852490
Alignment:
Q  14 aatattctcaaagaaaagttatattacttgaatgcttcaatgcttgatgatgcttgagtatgcccaaaacactaggtggtgagccttatttatactacta 113  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||            ||||||||||||||||||||||||||||||||||||     
T  11852221 aatattctcaaagaaaagttatattacttgaatgattcaatgcttgacgat------------ccaaaacactaggtggtgagccttatttatactactc 11852308  T
Q  114 taggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagacatggatactctagtacataagcctagaaggatctagaaaagt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||    
T  11852309 taggaaggctctccattaccaactagaaatatctagaaacaaataaaagtctagagatatggatactctagtacataagcctagaaggtcctagaaaagt 11852408  T
Q  214 taagtcttccctagtgcttatttagtagtgtctagtaactttcatattattccctagtattctagagtcttccatattattc 295  Q
    || | |||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||| |||| |||||||||    
T  11852409 tatgacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattctagagacttctatattattc 11852490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 14 - 294
Target Start/End: Complemental strand, 22601041 - 22600772
Alignment:
Q  14 aatattctcaaagaaaag-ttatattacttgaatgcttcaatgcttgatgatgcttgagtatgcccaaaacactaggtggtgagccttatttatactact 112  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||    
T  22601041 aatattctcaaagaaaagattatattatttgaatgcttcaatgcttgatgat------------ccaaaacactaggtggtgagccttatttatactact 22600954  T
Q  113 ataggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagacatggatactctagtacataagcctagaaggatctagaaaag 212  Q
     ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  22600953 ttagcaagactctccattaccaactagaaatatctagaaacaaagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaag 22600854  T
Q  213 ttaagtcttccctagtgcttatttagtagtgtctagtaactttcatattattccctagtattctagagtcttccatattatt 294  Q
    ||||| ||||||||||||||||||||||||||| |||| ||||| ||||||||| ||||||||||||| |||| ||||||||    
T  22600853 ttaagacttccctagtgcttatttagtagtgtcaagtagctttcttattattccatagtattctagagacttctatattatt 22600772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 14 - 295
Target Start/End: Original strand, 23164300 - 23164565
Alignment:
Q  14 aatattctcaaagaaaagttatattacttgaatgcttcaatgcttgatgatgcttgagtatgcccaaaacactaggtggtgagccttatttatactacta 113  Q
    |||||||||||||||||||||||||||||||||| ||||||||||              ||  |||||||||||||||||| |||||||||||||||||     
T  23164300 aatattctcaaagaaaagttatattacttgaatgattcaatgctt--------------at--ccaaaacactaggtggtgggccttatttatactactc 23164383  T
Q  114 taggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagacatggatactctagtacataagcctagaaggatctagaaaagt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  23164384 taggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagt 23164483  T
Q  214 taagtcttccctagtgcttatttagtagtgtctagtaactttcatattattccctagtattctagagtcttccatattattc 295  Q
    |||| ||||||||||| |||||||||||||||||||| ||| | ||||||||||||||||||||||| |||| |||||||||    
T  23164484 taagacttccctagtgtttatttagtagtgtctagtagcttccttattattccctagtattctagagacttctatattattc 23164565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 14 - 217
Target Start/End: Complemental strand, 37215592 - 37215400
Alignment:
Q  14 aatattctcaaagaaaag-ttatattacttgaatgcttcaatgcttgatgatgcttgagtatgcccaaaacactaggtggtgagccttatttatactact 112  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||||||            ||||||||| ||||||||||||||||||||||||    
T  37215592 aatattctcaaagaaaagattatattatttgaatgcttcaatgcttgatgatgc------------aaaacactatgtggtgagccttatttatactact 37215505  T
Q  113 ataggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagacatggatactctagtacataagcctagaaggatctagaaaag 212  Q
     |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  37215504 ctaggaaggctcttcattaccaactagaaatatctagaaacaaagaaaagtttagagacatggatactctagtatataagcctagaaggatctagaaaag 37215405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 14 - 295
Target Start/End: Original strand, 1779263 - 1779550
Alignment:
Q  14 aatattctcaaagaaaagttatattacttgaatgcttcaatgcttgatgatgcttgagtatgcccaaaacactaggtggtgagccttatttatactacta 113  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||  |       ||    ||||||||| | ||||||||||||||||||| |||     
T  1779263 aatattctcaaagaaaagttatattacttgaatgattcaatacttgatttt-------ta----caaaacacttgttggtgagccttatttataccactc 1779351  T
Q  114 taggaaggctctccattaccaactagaaatatctagaa---------acaaagaaaagtctagagacatggatactctagtacataagcctagaaggatc 204  Q
    |||||||||||| |||||| |||||||| |||||||||         ||||||||| | ||||| |||||||||||||||| |||| | |||||||||||    
T  1779352 taggaaggctctacattacaaactagaattatctagaaacattgattacaaagaaaggcctagaaacatggatactctagttcatatgactagaaggatc 1779451  T
Q  205 tagaaaagttaagtcttccctagtgc------ttatttagt--agtgtctagtaactttcatattattccctagtattctagagtcttccatattattc 295  Q
    ||||||  |||||  ||  |||||||      |||||||||  ||||||||||| ||| | ||||||||| ||||||| ||||| |||| |||||||||    
T  1779452 tagaaacattaagatttttctagtgctttattttatttagtggagtgtctagtagcttccttattattccatagtattttagagacttctatattattc 1779550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 259 - 318
Target Start/End: Complemental strand, 37207707 - 37207645
Alignment:
Q  259 attattccctagtattctagagtcttccatatta---ttcaccattctagagacttccatatt 318  Q
    ||||||||||||||||||||||||||||||||||   |||| |||||||||||||||||||||    
T  37207707 attattccctagtattctagagtcttccatattattcttcatcattctagagacttccatatt 37207645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 154
Target Start/End: Complemental strand, 21743712 - 21743622
Alignment:
Q  63 atgcttgagtatgcccaaaacactaggtggtgagccttatttatactactataggaaggctctccattaccaactagaaatatctagaaaca 154  Q
    ||||||||||||||| ||  |||| ||||||||  ||||||||||||||| |||||||||||| || ||| ||||| ||||||||| |||||    
T  21743712 atgcttgagtatgcctaac-cacttggtggtgaatcttatttatactactctaggaaggctctacactacaaactaaaaatatctaaaaaca 21743622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 259 - 295
Target Start/End: Original strand, 23164589 - 23164625
Alignment:
Q  259 attattccctagtattctagagtcttccatattattc 295  Q
    |||||||||||||||||||||||||||||||||||||    
T  23164589 attattccctagtattctagagtcttccatattattc 23164625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 1779181 - 1779221
Alignment:
Q  80 aaacactaggtggtgagccttatttatactactataggaag 120  Q
    ||||||| ||||||||||||||||||||||||| |||||||    
T  1779181 aaacacttggtggtgagccttatttatactactctaggaag 1779221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 295
Target Start/End: Complemental strand, 22600747 - 22600711
Alignment:
Q  259 attattccctagtattctagagtcttccatattattc 295  Q
    ||||||||||| |||||||||||||||||||||||||    
T  22600747 attattccctaatattctagagtcttccatattattc 22600711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 21743751 - 21743705
Alignment:
Q  14 aatattctcaaagaaaagttatattacttgaatgcttcaatgcttga 60  Q
    ||||||||||||||||  |||||||| |||||| |||||||||||||    
T  21743751 aatattctcaaagaaagtttatattatttgaattcttcaatgcttga 21743705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 295
Target Start/End: Original strand, 11850256 - 11850292
Alignment:
Q  259 attattccctagtattctagagtcttccatattattc 295  Q
    |||||||| |||||||| |||||||||||||||||||    
T  11850256 attattccatagtattcaagagtcttccatattattc 11850292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 295
Target Start/End: Original strand, 11852514 - 11852550
Alignment:
Q  259 attattccctagtattctagagtcttccatattattc 295  Q
    |||||| | ||||||||||||||||||||||||||||    
T  11852514 attatttcatagtattctagagtcttccatattattc 11852550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 196; Significance: 1e-106; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 14 - 295
Target Start/End: Complemental strand, 31487023 - 31486742
Alignment:
Q  14 aatattctcaaag-aaaagttatattacttgaatgcttcaatgcttgatgatgcttgagtatgcccaaaacact-aggtggtgagccttatttatactac 111  Q
    ||||||||||||| ||||||||||||||||||||  ||||||||||||| || |||||||||||| |||||||| |||||||||||||||||||||||||    
T  31487023 aatattctcaaaggaaaagttatattacttgaatcattcaatgcttgattat-cttgagtatgcc-aaaacacttaggtggtgagccttatttatactac 31486926  T
Q  112 tataggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagacatggatactctagtacataagcctagaaggatctagaaaa 211  Q
    | ||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  31486925 tctaggaaggctctccattacaaactagaaatatctggaaacaaagaaaagtccagagatatggatactctagtacataagcctagaaggatctagaaaa 31486826  T
Q  212 gttaagtcttccctagtgcttatttagtagtgtctagtaactttcatattattccctagtattctagagtcttccatattattc 295  Q
    |||||| |||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||| |||| |||||||||    
T  31486825 gttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattctagagacttctatattattc 31486742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 14 - 295
Target Start/End: Complemental strand, 31489307 - 31489026
Alignment:
Q  14 aatattctcaaag-aaaagttatattacttgaatgcttcaatgcttgatgatgcttgagtatgcccaaaacact-aggtggtgagccttatttatactac 111  Q
    ||||||||||||| ||||||||||||||||||||  ||||||||||||| || |||||||||||| |||||||| |||||||||||||||||||||||||    
T  31489307 aatattctcaaaggaaaagttatattacttgaatcattcaatgcttgattat-cttgagtatgcc-aaaacacttaggtggtgagccttatttatactac 31489210  T
Q  112 tataggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagacatggatactctagtacataagcctagaaggatctagaaaa 211  Q
    | ||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||    
T  31489209 tttaggaaggctctccattacaaactagaaatatctggaaacaaagaaaagtccagagatatggatactctagtacataagcttagaaggatctagaaaa 31489110  T
Q  212 gttaagtcttccctagtgcttatttagtagtgtctagtaactttcatattattccctagtattctagagtcttccatattattc 295  Q
    | |||| |||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||| |||| |||||||||    
T  31489109 gctaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattctagagacttctatattattc 31489026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 35 - 210
Target Start/End: Complemental strand, 29802096 - 29801924
Alignment:
Q  35 tattacttgaatgcttcaatgcttgatgatgcttgagtatgcccaaaacactaggtggtgagccttatttatactactataggaaggctctccattacca 134  Q
    ||||| |||||||||| ||| ||| |  |||||||| |||||| ||| |||| ||||||||||||||||||||||||| ||||||| ||| ||||||| |    
T  29802096 tattatttgaatgcttgaattcttca--atgcttgactatgcctaaa-cacttggtggtgagccttatttatactactctaggaagactccccattacaa 29802000  T
Q  135 actagaaatatctagaaacaaagaaaagtctagagacatggatactctagtacataagcctagaaggatctagaaa 210  Q
    |||||||||||||| ||||||||||||||||||||| |||||| || |||| |||| | |||||||||| ||||||    
T  29801999 actagaaatatctacaaacaaagaaaagtctagagatatggatgctatagttcatatgactagaaggatttagaaa 29801924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 14 - 154
Target Start/End: Original strand, 42275602 - 42275739
Alignment:
Q  14 aatattctcaaagaaaagttatattacttgaatgcttcaatgcttgatgatgcttgagtatgcccaaaacactaggtggtgagccttatttatactacta 113  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||  |  |||| | |||| ||| ||||  ||||||||||||||||||||||||     
T  42275602 aatattctcaaagaaaagttatattacttgaatgattcaatacttgattct--ttgaatgtgcctaaa-cacttagtggtgagccttatttatactactc 42275698  T
Q  114 taggaaggctctccattaccaactagaaatatctagaaaca 154  Q
    |||||||||||| |||||| |||||||||||||||||||||    
T  42275699 taggaaggctctacattacaaactagaaatatctagaaaca 42275739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 14 - 154
Target Start/End: Original strand, 42277828 - 42277965
Alignment:
Q  14 aatattctcaaagaaaagttatattacttgaatgcttcaatgcttgatgatgcttgagtatgcccaaaacactaggtggtgagccttatttatactacta 113  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||  |  |||| | |||| ||| ||||  ||||||||||||||||||||||||     
T  42277828 aatattctcaaagaaaagttatattacttgaatgattcaatgcttgattct--ttgaatgtgcctaaa-cacttagtggtgagccttatttatactactc 42277924  T
Q  114 taggaaggctctccattaccaactagaaatatctagaaaca 154  Q
    ||||||| |||| |||||| |||||||||||||||||||||    
T  42277925 taggaagactctacattacaaactagaaatatctagaaaca 42277965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 80 - 230
Target Start/End: Original strand, 34576700 - 34576860
Alignment:
Q  80 aaacactaggtggtgagccttatttatactactat-aggaaggctctccattaccaactagaaatatctagaaaca---------aagaaaagtctagag 169  Q
    ||||||| | ||||||||||||||||||||| | | ||||||||||| |||||| |||||||||||||||||||||         |||||||||||||||    
T  34576700 aaacacttgatggtgagccttatttatactaatcttaggaaggctctacattacaaactagaaatatctagaaacattgattacaaagaaaagtctagag 34576799  T
Q  170 acatggatactctagtacataagcctagaaggatctagaaaagttaagtcttccctagtgc 230  Q
    ||||| |||||||||| |||| | ||||||||||||||||||||||||  ||| |||||||    
T  34576800 acatgaatactctagttcatatgactagaaggatctagaaaagttaagatttctctagtgc 34576860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 80 - 217
Target Start/End: Complemental strand, 23860077 - 23859931
Alignment:
Q  80 aaacactaggtggtgagccttatttatactactataggaaggctctccattaccaactagaaatatctagaa---------acaaagaaaagtctagaga 170  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||| |||||| |||||||| |||||||||         ||||||||| | ||||| |    
T  23860077 aaacacttggtggtgagccttatttatactactctaggaaggctctacattacaaactagaattatctagaaatattgattacaaagaaaggcctagaaa 23859978  T
Q  171 catggatactctagtacataagcctagaaggatctagaaaagttaag 217  Q
    |||| |||||||||| |||||| ||||||||||||||||||| ||||    
T  23859977 catgcatactctagttcataagactagaaggatctagaaaagctaag 23859931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 5164197 - 5164256
Alignment:
Q  14 aatattctcaaagaaaagttatattacttgaatgcttcaatgcttgatgatgcttgagtat 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  5164197 aatattctcaaagaaaagttatattacttgaatgcttcaatgcttgattat-cttgagtat 5164256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 8995116 - 8995162
Alignment:
Q  14 aatattctcaaagaaaagttatattacttgaatgcttcaatgcttga 60  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||    
T  8995116 aatattctcaaagaaaagttatattacttgaatgattcaatgcttga 8995162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 259 - 295
Target Start/End: Complemental strand, 31486718 - 31486682
Alignment:
Q  259 attattccctagtattctagagtcttccatattattc 295  Q
    |||||||||||||||||||||||||||||||||||||    
T  31486718 attattccctagtattctagagtcttccatattattc 31486682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 259 - 295
Target Start/End: Complemental strand, 31489002 - 31488966
Alignment:
Q  259 attattccctagtattctagagtcttccatattattc 295  Q
    |||||||||||||||||||||||||||||||||||||    
T  31489002 attattccctagtattctagagtcttccatattattc 31488966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 15730053 - 15730012
Alignment:
Q  14 aatattctcaaagaaaagttatattacttgaatgcttcaatg 55  Q
    |||||||||||| ||||||||||||||||||||| |||||||    
T  15730053 aatattctcaaataaaagttatattacttgaatgattcaatg 15730012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 210
Target Start/End: Original strand, 8995229 - 8995287
Alignment:
Q  152 acaaagaaaagtctagagacatggatactctagtacataagcctagaaggatctagaaa 210  Q
    ||||||||| | |||||  ||||||||||||||| |||| | |||||||||||||||||    
T  8995229 acaaagaaaggcctagaagcatggatactctagttcatatgactagaaggatctagaaa 8995287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 8995169 - 8995210
Alignment:
Q  78 caaaacactaggtggtgagccttatttatactactataggaa 119  Q
    ||||||||| ||||| ||||||||||||||||||| ||||||    
T  8995169 caaaacacttggtggagagccttatttatactactctaggaa 8995210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 14 - 191
Target Start/End: Complemental strand, 1755 - 1579
Alignment:
Q  14 aatattctcaaagaaaagttatattacttgaatgcttcaatgcttgatgatgcttgagtatgcccaaaacactaggtggtgagccttatttatactacta 113  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||     
T  1755 aatatcctcaaagaaaagttatattacttgaatgattcaatgcttgatgatgcttgagtatgcc-aaaacactaggtggtgagccttatttatactactc 1657  T
Q  114 taggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagacatggatactctagtacataa 191  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1656 taggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatactctagtacataa 1579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 14 - 154
Target Start/End: Complemental strand, 4530974 - 4530835
Alignment:
Q  14 aatattctcaaagaaaagttatattacttgaatgcttcaatgcttgatgatgcttgagtatgcccaaaacactaggtggtgagccttatttatactacta 113  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||     
T  4530974 aatattctcaaagaaaagttatattacttgaatgattcaatgcttgatgatgcttcagtatgcc-aaaacactaggtggtgagccttatttatactactc 4530876  T
Q  114 taggaaggctctccattaccaactagaaatatctagaaaca 154  Q
    |||||||||||| |||||| |||||||||||||||||||||    
T  4530875 taggaaggctctacattacaaactagaaatatctagaaaca 4530835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 14 - 148
Target Start/End: Complemental strand, 4533271 - 4533138
Alignment:
Q  14 aatattctcaaagaaaagttatattacttgaatgcttcaatgcttgatgatgcttgagtatgcccaaaacactaggtggtgagccttatttatactacta 113  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||     
T  4533271 aatattctcaaagaaaagttatattacttgaatgattcaatgcttgatgatgcttcagtatgcc-aaaacactaggtggtgagccttatttatactactc 4533173  T
Q  114 taggaaggctctccattaccaactagaaatatcta 148  Q
    |||||||||||| |||||| |||||||||||||||    
T  4533172 taggaaggctctacattacaaactagaaatatcta 4533138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 80 - 233
Target Start/End: Original strand, 18966221 - 18966374
Alignment:
Q  80 aaacactaggtggtgagccttatttatactactataggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagacatggatac 179  Q
    ||||||| ||||||||||||||||||||||||| ||||||| | |||||| ||  ||||||||||||||||||| |||||||||| ||||| ||||||||    
T  18966221 aaacacttggtggtgagccttatttatactactctaggaagacactccatgacacactagaaatatctagaaaccaagaaaagtcaagagatatggatac 18966320  T
Q  180 tctagtacataagcctagaaggatctagaaaagttaagtcttccctagtgctta 233  Q
    |||||||| || | |||||||||||||||||  |||||  || |||||||||||    
T  18966321 tctagtacgtatgactagaaggatctagaaacattaagattttcctagtgctta 18966374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 229
Target Start/End: Complemental strand, 1701179 - 1701104
Alignment:
Q  154 aaagaaaagtctagagacatggatactctagtacataagcctagaaggatctagaaaagttaagtcttccctagtg 229  Q
    ||||||||| ||||| | ||||||| |||| | |||| | ||||||||||||||||||||||||  ||||||||||    
T  1701179 aaagaaaagcctagaaatatggataatctaattcatatgactagaaggatctagaaaagttaagatttccctagtg 1701104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 295
Target Start/End: Complemental strand, 39578287 - 39578242
Alignment:
Q  250 aactttcatattattccctagtattctagagtcttccatattattc 295  Q
    |||||||| |||||||  ||||||||||||||||||||||| ||||    
T  39578287 aactttcacattattctttagtattctagagtcttccatatcattc 39578242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 8535578 - 8535522
Alignment:
Q  155 aagaaaagtctagagacatggatactctagtacataagcctagaaggatctagaaaa 211  Q
    |||||||||||||||| ||||||||| ||||  ||| | ||||||||||||| ||||    
T  8535578 aagaaaagtctagagatatggatactttagtttatatgactagaaggatctaaaaaa 8535522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 83 - 233
Target Start/End: Complemental strand, 29410 - 29261
Alignment:
Q  83 cactaggtggtgagccttatttatactactataggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagacatggatactct 182  Q
    |||| ||||||||||||||||||||||||| ||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||||| ||||||  |||    
T  29410 cacttggtggtgagccttatttatactactctaggaagactctccattacaaactaaaaatatctagaaac-aagaaaagtctagagatatggatgttct 29312  T
Q  183 agtacataagcctagaaggatctagaaaagttaagtcttccctagtgctta 233  Q
    |||||||| | |||||||||||||||||  |||||  ||||||||||||||    
T  29311 agtacatatgactagaaggatctagaaacattaagatttccctagtgctta 29261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 63 - 233
Target Start/End: Complemental strand, 31744 - 31574
Alignment:
Q  63 atgcttgagtatgcccaaaacactaggtggtgagccttatttatactactataggaaggctctccattaccaactagaaatatctagaaacaaagaaaag 162  Q
    ||||||||||||||| | | |||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||| ||||||||    
T  31744 atgcttgagtatgcctaca-cacttggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctaaaaac-aagaaaag 31647  T
Q  163 tctagag--acatggatactctagtacataagcctagaaggatctagaaaagttaagtcttccctagtgctta 233  Q
    |||||||  | ||||||  ||||||||||| | |||||||||||||||||  |||||  ||||||||||||||    
T  31646 tctagagatatatggatgttctagtacatatgactagaaggatctagaaacattaagatttccctagtgctta 31574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 88485 - 88422
Alignment:
Q  14 aatattctcaaagaaaagttatattacttgaatgcttcaatgcttgatgatgcttgagtatgcc 77  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  88485 aatattctcaaagaaaagttatattacttgaatgattcaatgtttgatgatgcttgagtatgcc 88422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 318
Target Start/End: Complemental strand, 73144 - 73080
Alignment:
Q  257 atattattccctagtattctagagtcttccatattattc---accattctagagacttccatatt 318  Q
    |||||||||  |||| |||||||| ||||||||||||||   |||||||||||||||||||||||    
T  73144 atattattctttagtcttctagagacttccatattattcttcaccattctagagacttccatatt 73080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 88 - 295
Target Start/End: Complemental strand, 21199374 - 21199148
Alignment:
Q  88 ggtggtgagccttatttatactactataggaaggctctccattaccaactagaaatatctagaa---------acaaagaaaagtctagagac--atgga 176  Q
    |||||||| ||||||||||| ||||  ||||||||| | |||||| ||||||||||||||||||         |||| |||| | ||||||||  |||||    
T  21199374 ggtggtgaaccttatttatagtactccaggaaggctgtacattacaaactagaaatatctagaaacattgattacaatgaaaggcctagagacatatgga 21199275  T
Q  177 tactctagtacataagcctagaaggatctagaaaagttaagtcttccctagtgc------ttatttagt--agtgtctagtaactttcatattattccct 268  Q
    ||||| ||| |||| | |||||||||||||||||  |||||  ||  |||||||      |||||||||  ||||| ||||| ||| | ||||||||| |    
T  21199274 tactccagttcatatgactagaaggatctagaaacattaagatttaactagtgctttattttatttagtagagtgtatagtagcttccttattattccat 21199175  T
Q  269 agtattctagagtcttccatattattc 295  Q
    |||||||||||| ||||||||||||||    
T  21199174 agtattctagagacttccatattattc 21199148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1361 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1361
Description:

Target: scaffold1361; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 109
Target Start/End: Complemental strand, 94 - 1
Alignment:
Q  14 aatattctcaaa-gaaaagttatattacttgaatgcttcaatgcttgatgatgcttgagtatgcccaaaacactaggtggtgagccttatttatact 109  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||  |  |||| | || || |||||||  |||||||||||||||||||||    
T  94 aatattctcaaacgaaaagttatattacttgaatgattcaatgcttgat--tctttgaatgtg-cctaaacacttagtggtgagccttatttatact 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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