View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16780_low_41 (Length: 314)
Name: NF16780_low_41
Description: NF16780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16780_low_41 |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 9 - 297
Target Start/End: Complemental strand, 1732119 - 1731831
Alignment:
| Q |
9 |
acatcatcataatgaaaaacatatccaaattcattcatcaaagaaagcaagcaaccaacctgctcggaagtgaggcggcgcttcttctccggtgactgct |
108 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1732119 |
acatcatcatagtgaaaaacatatccaaattcattcatcaaagaaagcaagcaaccaacctgctcggaagtgaggcggcgcttcttctccggtgactgct |
1732020 |
T |
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| Q |
109 |
cctcgtagtactcctcatcatacagttcatcaggtgagctaaagaaaggtctcctctttgagccttcctccatgctcatcattgaccttcctgctttcat |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1732019 |
cctcgtagtactcctcatcatacagttcatcaggtgagctaaagaaaggtctcctctttgagccttcctccatgctcatcattgaccttcctgctttcat |
1731920 |
T |
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| Q |
209 |
tcnnnnnnnnnnnnnnnnnnnnnnncctcatcaatttacactcttttctacatcaaacacctcaaacaacatctatatcacaaatcata |
297 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1731919 |
tcagaaaaattcaaaaaattaaaaacctcatcaatttacactcttttctacatcaaacacctcaaacaacatctatatcacaaatcata |
1731831 |
T |
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