View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16780_low_44 (Length: 297)
Name: NF16780_low_44
Description: NF16780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16780_low_44 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 287
Target Start/End: Complemental strand, 18090222 - 18089959
Alignment:
| Q |
20 |
tttgctttctttatgcaattttcagttgaaggcagcaagagtacacaaacaagacacaagaacacaaaggaatatccctatgaatgagtcacgtgaatgg |
119 |
Q |
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| T |
18090222 |
tttgctttctttatgcaattttcagttgaaagcagcaagagtacacaaacaagacacaagaacacaaaggaatatccctatgaatgagtcacgtgaatgg |
18090123 |
T |
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| Q |
120 |
nnnnnnnntatatcaacatgttgaacattacttctcgtttaaggactgcattaagcatttttatgctagtttaaagctctaatagtcctaannnnnnnna |
219 |
Q |
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| T |
18090122 |
aaaaaatatatatcaacatgttgaacattacttctcgtttaaggactgcattaagcatttttatgctagtttaaagctctaatagtccta----tttttt |
18090027 |
T |
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| Q |
220 |
tagacgaaacgataatagtcactaaaaactcacacatataaatgaattagttagggcttgaacctttg |
287 |
Q |
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| T |
18090026 |
tagacgaaacgataatagtcattaaaaattcacgcatataaatgaattagttagggcttgaacttttg |
18089959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 118
Target Start/End: Complemental strand, 18082511 - 18082483
Alignment:
| Q |
90 |
aatatccctatgaatgagtcacgtgaatg |
118 |
Q |
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| T |
18082511 |
aatatccctatgaatgagtcacgtgaatg |
18082483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 32105157 - 32105200
Alignment:
| Q |
219 |
atagacgaaacgataatagtcactaaaaactcacacatataaat |
262 |
Q |
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| T |
32105157 |
atagacgaaatgataatagtcattaaaaaatcacacatataaat |
32105200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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