View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16780_low_46 (Length: 290)
Name: NF16780_low_46
Description: NF16780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16780_low_46 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 11 - 271
Target Start/End: Original strand, 18728722 - 18728968
Alignment:
| Q |
11 |
ttatacttgccgaggaatgcaccattagccgaactgcgtggacaaagattgtgtctcattgtcatgcaattttttcgtttcttttaaacttctatattca |
110 |
Q |
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| T |
18728722 |
ttatacttgctgaggaatgcaccattagccgaactgcgtggacaaagattgtgtctcattgtcatgcaattttttcgtttcttttaaacttctatattga |
18728821 |
T |
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| Q |
111 |
ctcatttctactatcatgaatgcagtaagttttaagcttttctctcttattcttatggatgccatgtttcttaacggactttaaaaaggaacaccacgtt |
210 |
Q |
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| T |
18728822 |
ctcatttctactatcatgaatacagtaagttttaagct--------------ttatggatgccatgtttcttaacggactttaaaaaggaacaccacgtt |
18728907 |
T |
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| Q |
211 |
cataatttctggagctaaatttgattcacacaccacatcaaattaaaaaacagttaggcat |
271 |
Q |
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| T |
18728908 |
cataatttctggagctaaatttgattcacacaccacatcaaattaaaaaacagttaggcat |
18728968 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 39129490 - 39129565
Alignment:
| Q |
29 |
gcaccattagccgaactgcgtggacaaagattgtgtctcattgtcatgcaattttttcgtttcttttaaacttctata |
106 |
Q |
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| T |
39129490 |
gcaccatttgtcaaactgcgtgaacaaagactgtgtctcattgtcttgcaa--ttttggtttcttttatacttctata |
39129565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 185
Target Start/End: Complemental strand, 35416130 - 35416090
Alignment:
| Q |
144 |
aagcttttctctcttattcttatggatgccatgtttcttaac |
185 |
Q |
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| T |
35416130 |
aagcttttctctct-atttttatggatgccatgtttcttaac |
35416090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 23849866 - 23849910
Alignment:
| Q |
29 |
gcaccattagccgaactgcgtggacaaagattgtgtctcattgtc |
73 |
Q |
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| T |
23849866 |
gcaccattggccgaactgcgtgaacaaagatcatgtctcattgtc |
23849910 |
T |
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