View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16780_low_48 (Length: 273)

Name: NF16780_low_48
Description: NF16780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16780_low_48
NF16780_low_48
[»] chr3 (5 HSPs)
chr3 (1-194)||(31434191-31434383)
chr3 (192-257)||(31433340-31433405)
chr3 (127-192)||(11906695-11906760)
chr3 (124-193)||(11027974-11028043)
chr3 (7-80)||(11906500-11906572)
[»] chr4 (3 HSPs)
chr4 (117-191)||(17816064-17816138)
chr4 (7-77)||(11950664-11950733)
chr4 (117-190)||(8745798-8745871)
[»] chr6 (4 HSPs)
chr6 (117-192)||(22956535-22956610)
chr6 (117-192)||(23831782-23831857)
chr6 (7-80)||(31216194-31216266)
chr6 (125-194)||(31216385-31216455)
[»] chr1 (4 HSPs)
chr1 (9-80)||(47368000-47368070)
chr1 (117-193)||(10177821-10177897)
chr1 (117-190)||(11142599-11142672)
chr1 (117-192)||(52111098-52111171)
[»] chr8 (3 HSPs)
chr8 (117-192)||(6115029-6115104)
chr8 (124-169)||(18881445-18881490)
chr8 (7-80)||(6114844-6114916)
[»] chr7 (4 HSPs)
chr7 (117-192)||(25592062-25592137)
chr7 (7-80)||(25592251-25592323)
chr7 (7-80)||(14047135-14047209)
chr7 (7-80)||(14357165-14357239)
[»] scaffold0186 (1 HSPs)
scaffold0186 (124-177)||(22646-22699)
[»] scaffold0005 (1 HSPs)
scaffold0005 (117-190)||(292352-292425)
[»] chr5 (3 HSPs)
chr5 (124-197)||(40361127-40361200)
chr5 (117-193)||(41640152-41640228)
chr5 (127-194)||(16908747-16908814)
[»] chr2 (2 HSPs)
chr2 (117-194)||(4435177-4435254)
chr2 (117-194)||(18308108-18308185)


Alignment Details
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 31434383 - 31434191
Alignment:
Q  1 ataatttgaaaattaacttagagcagcaacaaatgacaaaacttgatagtatgctatttaaaaaagttggacaaaatgtgnnnnnnnnatccataattga 100  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||        ||||||||||||    
T  31434383 ataattcgaaaattaacttagagcagcaacaaatgacaaaaattgatagtatgctatttaaaaaagttggacaaaatgtgttttttt-atccataattga 31434285  T
Q  101 cggtttaaaaaatagattattgatgaaaaagttttctctatagttgttattgacatcggaagttccaaacctatacatataaatctatcaatca 194  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  31434284 cggtttaaaaaatagattcttgatgaaaaagttttctctatagttgttattgacatcggaagtaccaaacttatacatataaatctatcaatca 31434191  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 192 - 257
Target Start/End: Complemental strand, 31433405 - 31433340
Alignment:
Q  192 tcacaccacacgtccagagtcagcgcaattcctatgggaggagcatggctaatcaagacaactata 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31433405 tcacaccacacgtccagagtcagcgcaattcctatgggaggagcatggctaatcaagacaactata 31433340  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 192
Target Start/End: Original strand, 11906695 - 11906760
Alignment:
Q  127 aaaagttttctctatagttgttattgacatcggaagttccaaacctatacatataaatctatcaat 192  Q
    ||||||| |||||||| |||||||||| | ||||||| ||||||| ||||| ||||||||||||||    
T  11906695 aaaagttctctctataattgttattgagagcggaagtaccaaaccaatacaaataaatctatcaat 11906760  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 193
Target Start/End: Original strand, 11027974 - 11028043
Alignment:
Q  124 tgaaaaagttttctctatagttgttattgacatcggaagttccaaacctatacatataaatctatcaatc 193  Q
    |||||||| ||||| ||| ||||||||||| |  ||||||  |||||| ||||| |||||||||||||||    
T  11027974 tgaaaaaggtttctttattgttgttattgagactggaagtatcaaaccaatacaaataaatctatcaatc 11028043  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 11906500 - 11906572
Alignment:
Q  7 tgaaaattaacttagagcagcaacaaatgacaaaacttgatagtatgctatttaaaaaagttggacaaaatgtg 80  Q
    |||||||||||| ||||||||||||||| | |||| ||||   || |||||||||||||||||||  |||||||    
T  11906500 tgaaaattaactaagagcagcaacaaataataaaaattgacgata-gctatttaaaaaagttggatgaaatgtg 11906572  T

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Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 117 - 191
Target Start/End: Original strand, 17816064 - 17816138
Alignment:
Q  117 ttattgatgaaaaagttttctctatagttgttattgacatcggaagttccaaacctatacatataaatctatcaa 191  Q
    |||||| |||| ||||||||||||||||||||||| | || |||||| ||||||| |||||||||||||||||||    
T  17816064 ttattgttgaataagttttctctatagttgttattaagattggaagtaccaaaccaatacatataaatctatcaa 17816138  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 11950733 - 11950664
Alignment:
Q  7 tgaaaattaacttagagcagcaacaaatgacaaaacttgatagtatgctatttaaaaaagttggacaaaat 77  Q
    |||||||||||| ||||||| ||||||||| |||| |||| | || |||||||| ||||||||||||||||    
T  11950733 tgaaaattaactaagagcagtaacaaatgataaaaattgacaata-gctatttagaaaagttggacaaaat 11950664  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 8745798 - 8745871
Alignment:
Q  117 ttattgatgaaaaagttttctctatagttgttattgacatcggaagttccaaacctatacatataaatctatca 190  Q
    |||||| ||||||||  |||||||| ||||||||||| ||||| |||  |||||| ||||| ||||||||||||    
T  8745798 ttattgttgaaaaaggcttctctattgttgttattgagatcgggagtatcaaaccaatacaaataaatctatca 8745871  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 192
Target Start/End: Original strand, 22956535 - 22956610
Alignment:
Q  117 ttattgatgaaaaagttttctctatagttgttattgacatcggaagttccaaacctatacatataaatctatcaat 192  Q
    |||||| |||||||||| |||||||| |||||||||| | ||||||| ||||||| ||||| ||||||||||||||    
T  22956535 ttattgttgaaaaagttctctctataattgttattgagagcggaagtaccaaaccaatacaaataaatctatcaat 22956610  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 192
Target Start/End: Complemental strand, 23831857 - 23831782
Alignment:
Q  117 ttattgatgaaaaagttttctctatagttgttattgacatcggaagttccaaacctatacatataaatctatcaat 192  Q
    |||||| |||||||||| |||||||| |||||||||| | ||||||| ||||||| ||||| ||||||||||||||    
T  23831857 ttattgttgaaaaagttctctctataattgttattgagagcggaagtaccaaaccaatacaaataaatctatcaat 23831782  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 31216194 - 31216266
Alignment:
Q  7 tgaaaattaacttagagcagcaacaaatgacaaaacttgatagtatgctatttaaaaaagttggacaaaatgtg 80  Q
    |||||||||||| ||||||| ||||||||| ||||||||| | || ||||||||||| ||||||||||||||||    
T  31216194 tgaaaattaactaagagcagtaacaaatgataaaacttgaaaata-gctatttaaaatagttggacaaaatgtg 31216266  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 194
Target Start/End: Original strand, 31216385 - 31216455
Alignment:
Q  125 gaaaaagttttctctatagttgttattgacatcggaagt-tccaaacctatacatataaatctatcaatca 194  Q
    |||||||||||||||||| || ||||| | | ||||||| || ||||| ||||| ||||||||||||||||    
T  31216385 gaaaaagttttctctataattattattaaaaccggaagtatcaaaaccaatacaaataaatctatcaatca 31216455  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 47368070 - 47368000
Alignment:
Q  9 aaaattaacttagagcagcaacaaatgacaaaacttgatagtatgctatttaaaaaagttggacaaaatgtg 80  Q
    ||||||||||||||| |||||||||||| |||| |||| | ||| |||||||||||||||||||||||||||    
T  47368070 aaaattaacttagagtagcaacaaatgataaaaattgacaatat-ctatttaaaaaagttggacaaaatgtg 47368000  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 193
Target Start/End: Complemental strand, 10177897 - 10177821
Alignment:
Q  117 ttattgatgaaaaagttttctctatagttgttattgacatcggaagttccaaacctatacatataaatctatcaatc 193  Q
    |||||| |||||||  ||||||||| ||||||||||| ||||| |||  |||||  ||||| |||||||||||||||    
T  10177897 ttattgttgaaaaaagtttctctattgttgttattgagatcgggagtatcaaacaaatacaaataaatctatcaatc 10177821  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 190
Target Start/End: Complemental strand, 11142672 - 11142599
Alignment:
Q  117 ttattgatgaaaaagttttctctatagttgttattgacatcggaagttccaaacctatacatataaatctatca 190  Q
    |||||| ||||||||  |||||||| ||||||||| | ||||| |||  |||||| ||||| ||||||||||||    
T  11142672 ttattgttgaaaaaggcttctctattgttgttatttagatcgggagtatcaaaccaatacaaataaatctatca 11142599  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 192
Target Start/End: Original strand, 52111098 - 52111171
Alignment:
Q  117 ttattgatgaaaaagttttctctatagttgttattgacatcggaagttccaaacctatacatataaatctatcaat 192  Q
    |||||| ||||| |||||||||||  ||||||||||| |||| ||||  |||||| ||||| |||||| |||||||    
T  52111098 ttattgttgaaatagttttctcta--gttgttattgagatcgaaagtatcaaaccaatacaaataaatttatcaat 52111171  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 117 - 192
Target Start/End: Original strand, 6115029 - 6115104
Alignment:
Q  117 ttattgatgaaaaagttttctctatagttgttattgacatcggaagttccaaacctatacatataaatctatcaat 192  Q
    |||||| | |||||||| |||||||| |||||||||| ||| ||||| ||||||| ||||| ||||||||||||||    
T  6115029 ttattgttaaaaaagttctctctataattgttattgagatcagaagtaccaaaccaatacaaataaatctatcaat 6115104  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 18881490 - 18881445
Alignment:
Q  124 tgaaaaagttttctctatagttgttattgacatcggaagttccaaa 169  Q
    |||||||||||||||||| ||||||||||| | |||||||||||||    
T  18881490 tgaaaaagttttctctatcgttgttattgaaaccggaagttccaaa 18881445  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 6114844 - 6114916
Alignment:
Q  7 tgaaaattaacttagagcagcaacaaatgacaaaacttgatagtatgctatttaaaaaagttggacaaaatgtg 80  Q
    |||||||||||| ||||| ||||||||| | |||| |||||  || |||||||||||||| |||| ||||||||    
T  6114844 tgaaaattaactaagagcggcaacaaataataaaaattgatgata-gctatttaaaaaagctggataaaatgtg 6114916  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 117 - 192
Target Start/End: Complemental strand, 25592137 - 25592062
Alignment:
Q  117 ttattgatgaaaaagttttctctatagttgttattgacatcggaagttccaaacctatacatataaatctatcaat 192  Q
    |||||| |||||||||| |||||||| |||||||||| | ||||||| ||||| | ||||| ||||||||||||||    
T  25592137 ttattgttgaaaaagttctctctataattgttattgagagcggaagtaccaaatcaatacaaataaatctatcaat 25592062  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 25592323 - 25592251
Alignment:
Q  7 tgaaaattaacttagagcagcaacaaatgacaaaacttgatagtatgctatttaaaaaagttggacaaaatgtg 80  Q
    |||||||||||| ||||||||||||||| | |||| ||||   || ||||||||||||||||||| ||||||||    
T  25592323 tgaaaattaactaagagcagcaacaaataataaaaattgacgata-gctatttaaaaaagttggataaaatgtg 25592251  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 14047209 - 14047135
Alignment:
Q  7 tgaaaattaacttagagcagcaacaaatgacaaaacttgatagtatgctatttaaaaaa--gttggacaaaatgtg 80  Q
    |||||||||||| ||||||| | ||||||| |||| |||| ||||  ||||||||||||  |||||||||||||||    
T  14047209 tgaaaattaactaagagcagtagcaaatgataaaaattgacagtaa-ctatttaaaaaaaagttggacaaaatgtg 14047135  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 14357239 - 14357165
Alignment:
Q  7 tgaaaattaacttagagcagcaacaaatgacaaaacttgatagtatgctatttaaaaaa--gttggacaaaatgtg 80  Q
    |||||||||||| ||||||| | ||||||| |||| |||| ||||  ||||||||||||  |||||||||||||||    
T  14357239 tgaaaattaactaagagcagtagcaaatgataaaaattgacagtaa-ctatttaaaaaaaagttggacaaaatgtg 14357165  T

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Target: scaffold0186 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 177
Target Start/End: Complemental strand, 22699 - 22646
Alignment:
Q  124 tgaaaaagttttctctatagttgttattgacatcggaagttccaaacctataca 177  Q
    |||||||||||||||||| ||||||||||| | ||||||||||||||| |||||    
T  22699 tgaaaaagttttctctattgttgttattgaaaccggaagttccaaaccaataca 22646  T

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Target: scaffold0005 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 292352 - 292425
Alignment:
Q  117 ttattgatgaaaaagttttctctatagttgttattgacatcggaagttccaaacctatacatataaatctatca 190  Q
    |||||| ||||||||  |||||||||||||||||||| ||||| |||  |||||| ||||| ||||||||||||    
T  292352 ttattgttgaaaaaggcttctctatagttgttattgagatcgggagtatcaaaccaatacaaataaatctatca 292425  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 197
Target Start/End: Original strand, 40361127 - 40361200
Alignment:
Q  124 tgaaaaagttttctctatagttgttattgacatcggaagttccaaacctatacatataaatctatcaatcacac 197  Q
    |||||||||||||||||||  |||| |||| | | ||||| ||||||| ||| | |||||||||||||||||||    
T  40361127 tgaaaaagttttctctataaatgttgttgagaccagaagtaccaaaccgataaagataaatctatcaatcacac 40361200  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 193
Target Start/End: Original strand, 41640152 - 41640228
Alignment:
Q  117 ttattgatgaaaaagttttctctatagttgttattgacatcggaagttccaaacctatacatataaatctatcaatc 193  Q
    |||||| |||||||| ||||| ||| ||||||||||| |  ||||||  |||||| ||||| |||||||||||||||    
T  41640152 ttattgttgaaaaaggtttctttattgttgttattgagacgggaagtatcaaaccaatacaaataaatctatcaatc 41640228  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 194
Target Start/End: Original strand, 16908747 - 16908814
Alignment:
Q  127 aaaagttttctctatagttgttattgacatcggaagttccaaacctatacatataaatctatcaatca 194  Q
    |||||||||||||||| |||||||||| | |||||||  |||||| ||| | | ||||||||||||||    
T  16908747 aaaagttttctctataattgttattgagaccggaagtatcaaaccaatataaacaaatctatcaatca 16908814  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 194
Target Start/End: Complemental strand, 4435254 - 4435177
Alignment:
Q  117 ttattgatgaaaaagttttctctatagttgttattgacatcggaagttccaaacctatacatataaatctatcaatca 194  Q
    |||||| | |||||| |||||||||| |||||||||| | |||||||  |||||  ||||| ||||||||||||||||    
T  4435254 ttattgttaaaaaaggtttctctataattgttattgagaccggaagtatcaaacaaatacaaataaatctatcaatca 4435177  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 194
Target Start/End: Complemental strand, 18308185 - 18308108
Alignment:
Q  117 ttattgatgaaaaagttttctctatagttgttattgacatcggaagttccaaacctatacatataaatctatcaatca 194  Q
    |||||| || |||||||||||||||| ||||||||||  ||| | ||  |||||  ||||| ||||||||||||||||    
T  18308185 ttattgttgtaaaagttttctctatatttgttattgaggtcgaatgtatcaaacgaatacaaataaatctatcaatca 18308108  T

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